Phytobacter ursingii: AB182_09515
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Entry
AB182_09515 CDS
T03950
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
kin
Phytobacter ursingii
Pathway
kin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB182_09515 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kin03019
]
AB182_09515 (rne)
03009 Ribosome biogenesis [BR:
kin03009
]
AB182_09515 (rne)
Enzymes [BR:
kin01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AB182_09515 (rne)
Messenger RNA biogenesis [BR:
kin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AB182_09515 (rne)
Ribosome biogenesis [BR:
kin03009
]
Prokaryotic type
rRNA processing factors
AB182_09515 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AKL11523
UniProt:
A0AAC8QMH9
LinkDB
All DBs
Position
complement(1266596..1269787)
Genome browser
AA seq
1063 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSADAL
QWDLSFRLKHWEAIQKAAENRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHISALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRAAVSAIETRQGGVRCVIVPNDQME
TPHYSVLRVRKGEETTTLSYMLPKLHEEEMAMPSDEEAAERKRPEQPALATFVMPDVPPA
PTVPEAPVAKPQPAAISAPAVAAPAAPGLLSRFFSALKNLFAGGETAAPADVKEEKTEEK
QERQQDRRKSRQGNRRDRNERREPRGEGGEGRENNRDENRRNRREKPQQNAEAREARQPV
PVAAEETEKSKQRDEQQPSRRERNRRRNSDEKRQPQQDVKALNREEQPEQETEQEERVQV
MPRRKPRQLNQKIRIDGAQTNTNEEVVVAAEPKTTEASAQRTDLAKLDLPAVVENTAEQE
ETAENRDTAGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSAMPLEIACASPEMASGKVW
IRYPVARPQDEVQEVPAVEQQNNAVANDVAPAIAEAEQVVLAAQQEQQPVVAEAQVHGEE
VVEVAPQAPVVEPEPVVVDTTHPEVIEAPVEAQPELIAVQDRPVAEEVAQAAEPADMTPA
VEEAAPVTEQPHAAVEDKQPEAIPVAPVVEATAPLTAAPVAAGEANHATAPMTKAPAPAY
VPEAPRHSDWVRPQFSFDGKGSAGGHSATHTATAPATRPNAAE
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaagaagagttgcgtgtcgcccttgttgat
gggcagcgtctgtacgatctggatattgaaagtcctggacacgagcagaaaaaagcgaac
atctacaaaggtaaaatcacccgtattgaaccgagcctggaagctgcatttgttgattac
ggtgctgaacgtcacggtttccttcccctcaaagaaattgcccgcgaatacttccctgcc
aattacaactctcatggccgtccgaacatcaaagatgtgttgcgcgaaggtcaggaagtt
attgtccagattgataaagaagaacgcggcaacaaaggcgctgcgctgaccacctttatc
agcctggcaggcagctatctggtactgatgccaaacaacccgcgcgcgggcggcatttct
cgtcgtattgaaggcgatgatcgtaccgaactgaaagaagcgctggccagtctcgaattg
ccggatggcatgggtctgattgtccgcactgccggtgtgggtaaatctgccgatgccctg
cagtgggatctgagtttccgtctcaaacactgggaagccattcagaaagccgctgaaaac
cgccctgctccgttcctgattcaccaggagagtaacgtcatcgttcgtgctttccgtgat
tatctgcgtcaggacattggtgaaatccttatcgataatccgaaagtgcttgagctggct
cgccagcatatctcggcgctgggtcgtccggatttcagcagcaaaattaagctctacacc
ggtgaaattccgctgttcagccactaccaaatcgaatcgcagattgaatccgctttccag
cgtgaagtccgtctgccgtccggcggctctatcgttatcgacagtaccgaagcgttgacc
gccatcgacatcaactccgcgcgtgcaactcgcggtggtgatatcgaagaaaccgcgttt
aacactaacctggaagcagccgacgaaattgcacgtcagctgcgtctgcgtgacctcggc
ggtttgatcgttatcgactttatcgatatgacgccggtacgccatcagcgtgcggtggag
aaccgtctgcgcgaagccgttcgtcaggaccgtgcgcgtattcaaattagccatatttct
cgctttggcctgctggagatgtcccgtcagcgcctgagcccgtcactgggcgagtccagt
caccatgtgtgcccacgttgtagcggaaccgggactatccgtgacaacgaatccctgtca
ctttctattcttcgtctcattgaagaagaagcgctgaaagagaatacgcaggaagtacat
gccatcgttccggtgccgattgcctcgtatctgttgaacgaaaaacgcgccgccgtaagc
gctattgaaacccgccagggtggtgtgcgttgcgtgatcgtaccgaacgatcagatggaa
acaccgcactactccgtactgcgcgtacgtaaaggcgaagagaccaccaccctcagctac
atgctgccgaagctgcatgaagaagagatggccatgccgtcagacgaagaagctgctgag
cgtaaacgtcctgagcagcctgcactggcaaccttcgtcatgccggatgttccgcctgcg
cctaccgttccggaagcgccggtagcgaaaccgcagccggctgccatcagcgcgcctgct
gtcgcagcgcctgctgcgccgggtcttctgagccgtttcttctccgccctgaaaaacctg
tttgcgggtggtgaaactgcggcgccagccgacgttaaagaagagaagacggaagagaag
caggagcgccagcaagatcgccgtaaatcgcgtcagggtaaccgccgcgatcgcaatgaa
cgccgagagccgcgtggagaaggtggtgaaggtcgtgagaacaaccgcgatgaaaaccgc
cgcaaccgccgggagaaaccgcagcaaaatgccgaggcgcgtgaagctcgccagccagtt
ccggtagccgcggaagagacggaaaaaagcaaacagcgtgatgagcagcaaccttcccgc
cgcgagcgtaatcgccgtcgtaatagcgacgaaaaacgccagccgcagcaggatgtaaaa
gcgctgaaccgtgaagaacagcctgagcaggaaaccgaacaggaagagcgcgttcaggta
atgccgcgtcgtaagccgcgtcagttgaaccaaaaaatccgtatcgatggtgctcagaca
aacaccaatgaagaggttgttgttgcagccgaaccgaaaaccacggaagcgtccgcacaa
cgtaccgatctggcgaaactggatctgccagcggttgtcgaaaacaccgctgagcaagaa
gaaaccgcagaaaatcgcgatactgcaggcatgccgcgtcgttctcgccgttcaccgcgt
catctgcgcgtaagcggtcagcgtcgtcgccgttaccgtgatgagcgttacccgacccag
tccgccatgccgctggagattgcctgtgcttcgcctgagatggcgtccggtaaagtctgg
attcgctacccggttgcccgtcctcaggacgaggtgcaagaagtaccggcggttgagcag
caaaacaatgccgtcgctaatgatgtcgcaccagcgattgccgaggctgaacaggttgtc
ttagccgcacagcaagaacaacagccagtcgtggctgaggcgcaggtacatggcgaagaa
gtggttgaagtcgcaccgcaggcgccggttgtcgaaccagaacctgttgtggttgacacc
acgcatccggaagtgattgaagctccggttgaagcgcagcctgaactgatcgcagtgcaa
gaccgtccggtcgccgaagaggtggcgcaggccgctgaacctgctgatatgacgccagcg
gttgaagaagcggcgccggttacggagcaaccgcacgctgcagttgaagacaaacagcca
gaagctatcccggtagcgccggttgttgaagctactgcaccgctcactgcagcacctgtt
gcagccggcgaggccaaccatgccactgcgccgatgaccaaagcgcccgcacctgcctat
gtgccggaagcgccgcgtcacagtgactgggtccgtccgcagttcagctttgatggcaaa
ggctcagcagggggtcacagcgccacgcatacggcaactgcgccggccacgcgtccgaac
gcagcagaataa
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