Phytobacter ursingii: AB182_09665
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Entry
AB182_09665 CDS
T03950
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kin
Phytobacter ursingii
Pathway
kin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AB182_09665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kin03400
]
AB182_09665
Enzymes [BR:
kin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AB182_09665
DNA repair and recombination proteins [BR:
kin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AB182_09665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AKL11552
UniProt:
A0AAC8QMR7
LinkDB
All DBs
Position
complement(1297305..1300751)
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEQYRYSLPVKPGEQRQLGELTGAACATEVAEIIERHKGPVVLITPDMQNALRLHDEIS
QFTDNLVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQRGVLIVSVNTLMQRVCPH
SYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSAQPY
RLDFFDDEIDSLRLFDADSQRTLEEVEAINLLPAHEFPTDKTAIELFRSQWRDKFDVKRD
AEHIYQQVSKGTLPTGIEYWQPLFFSEPLPSLFSYLPDNTLLINTGDLENSAERFSQETR
ARFENRGVDPMRPLLAPELLWLRVDELFSELKLWPRVQLKTENLVDKAANVNLGYRTLPD
LAVQAQQKSPLDNLRKFLESFSGPVVFSVESEGRREALGELLSRIKVAPKRITRLDDAQD
AGRYLIIGSAEHGFIDTLRNRALICESDLLGERVARRRQDTRRTINPDTLIRNLAELHPG
QPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYAGDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKSGFAFKHDREQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRVEMLSRFRSAKEQTQVLEQAAEGKIDILIGTHKLLQNDVKW
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDSLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKSENELDEIKVELIDRFGLLPDAARNLLDIARLRQQAQKLGIRKLEG
NEKGGSIEFNEKNHVNPAWLIGLLQKQPKHFRLDGPTRLKFFQELTDRKTRMDWVRNFMR
QLEENAIA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaataccgttattctctgcccgtcaaacccggcgagcagcgccagcttggc
gaactgactggtgctgcctgcgcgaccgaagtcgcggaaatcattgagcgacacaaaggt
ccggtagtactgattacgccggatatgcaaaatgccctgcgtctgcatgacgaaatcagc
cagttcaccgacaatctggtgatgaatcttgctgactgggagacgctgccgtatgacagt
ttctcgccgcatcaggaaatcatctcctcccgtctctccacactctaccagttgccctct
atgcagcgtggtgtgctgattgtctcggtaaatacattgatgcagcgcgtctgcccgcat
agctatttacacgggcatgcgttggtcatgaaaaaaggccagcggctgtcccgtgacgcg
ctgcgcgcgcagctggacagcgcagggtatcgccatgttgatcaggttatggaacacggt
gagtacgcgacccgcggggcgctgctggatctcttcccgatggggagcgcacaaccttat
cgtcttgatttcttcgatgatgaaattgacagccttcgtctgttcgatgcggacagccag
cgtacgctggaagaggtcgaggcgatcaatttactgcctgctcatgaattcccgacggat
aaaaccgcaatcgaactgtttcgcagtcagtggcgcgataagtttgacgtcaagcgcgat
gccgaacatatctatcaacaggtaagcaaaggcactttgccaaccggtattgaatactgg
cagcccctgtttttcagcgaaccgttgccgtcgttgtttagctatttgccggacaatacg
ctgcttattaacacgggcgatctggaaaacagcgctgaacgctttagccaggagacccgg
gcgcgctttgaaaatcgcggcgtggacccgatgcgccccttgctggcgcctgagttgctg
tggctgcgggtagatgagttgttcagcgaactcaaactctggcctcgcgtgcaactcaaa
accgaaaacctggtggacaaagccgccaatgtgaacctcggttaccggacattgccggat
ttggccgttcaggcacagcaaaaatcaccgctggataatttgcgcaaattcctcgaatcc
tttagtgggccggtcgtgttttcggtcgagagcgagggacgtcgtgaagcgctgggagaa
ctactctcacgtatcaaggttgcgccgaaacgcattacccgactggatgacgcgcaagat
gccgggcgctatctgatcattggttcggcagaacatggctttatcgacacgctacgtaac
cgcgcgctgatttgcgaaagcgatctgctgggtgagcgcgttgcccgccgccgccaggat
acgcgccgcacgattaatcccgatacgctgattcgcaaccttgctgaactgcacccaggc
cagccggtggtacacctggaacatggggttggacgctatgcagggatgaccacgcttgaa
gcgggcggcattaaaggcgaatacctgatgctgacttatgccggggatgccaaactctac
gtaccggtctcctcattgcatctgattagccgctatgccgggggcgcggaggagaacgcg
ccgctgcataaactgggcggcgatgcctgggcgcgggcgcggcagaaagcggcagaaaaa
gttcgtgatgtcgctgcagaactgctggatatctacgctcaacgcgccgcgaagtccggc
tttgcatttaaacacgatcgcgaacagtaccagcttttctgcgacagcttcccgtttgaa
accacgccagaccaggctcaagccattaacgcggtgttgagtgatatgtgccagccgctg
gctatggaccgcctggtctgcggcgatgtcggcttcggtaaaaccgaagtggccatgcgc
gccgccttccttgccgtcgaaaacaacaagcaggtggcggtgctggtgcccactaccctg
ctcgctcaacagcatttcgacaatttccgcgatcgcttcgccaactggccagtgcgtgtg
gagatgctttcgcgttttcgtagcgcaaaagaacagacacaggtgctggagcaggcggct
gagggcaaaatcgatattcttatcggtacccataagttgctgcaaaacgacgtgaagtgg
aaagatctggggctgctgattgtcgatgaagaacaccgcttcggcgtacgtcataaagag
cggattaaagcgatgcgcgcagacgtggatatcctcacgctaaccgcgacgccaattccg
cgtacactcaatatggccatgagcggtatgcgcgatctgtcgattatcgcaacgcctcct
gcgcgccgcctggctgtgaaaacattcgttcgcgaatacgacagcctggtcgtacgcgag
gcgatactgcgtgaagtcctgcgtggcgggcaggtttactacctttataacgacgtcgaa
aatattcagaaagctgccgacagactggcagaactggtaccggaagcacgtatcgccatc
ggccacggccagatgcgtgaacgcgaactggaacgggtgatgaatgatttccaccaccag
cgttttaatgtgctggtctgtaccaccatcatcgaaaccgggatcgacatccctaccgcg
aacacgatcattattgagcgagccgatcactttggcctggcgcaactccaccagctacgt
gggcgcgtgggtcgttcacaccaccaggcctatgcctggctgctgacaccacacccgaaa
gcgatgacgaccgatgcacagaagcgtctcgaagccattgcctcactggaggatttaggt
gccggtttcgcccttgcgacccatgatctggaaatccgcggcgccggcgaactgctggga
gaagatcagagcggttcaatggaaaccatcggcttttcgctgtatatggagttgctggaa
aatgcggtcgatgcgcttaaagccgggcgtgagccatcgcttgaagatctcaccagccag
caaacggaagtcgaactgaggatgccttccctgctgccggatgattttattcccgacgtc
aatacccgcctctctttctacaagcgcattgccagcgcgaagagtgaaaatgagctcgat
gagattaaagtggagttgattgaccgctttggcctgctgcctgacgccgcacgaaacctg
ctcgatattgcgcggctgcgtcaacaggcgcagaaactggggattcgtaagcttgaaggg
aatgaaaaaggcggctcgattgagttcaatgaaaaaaatcatgtcaatcccgcatggcta
atcggcctgttgcaaaaacagccaaaacacttccgccttgacggcccgacgcgcctgaaa
ttcttccaggagctgacggatcgcaaaactcgcatggactgggttcgtaacttcatgcga
cagttggaagagaacgcgatcgcatag
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integrated database retrieval system
