Phytobacter ursingii: AB182_23535
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Entry
AB182_23535 CDS
T03950
Name
(GenBank) RNA ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
kin
Phytobacter ursingii
Brite
KEGG Orthology (KO) [BR:
kin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
kin03016
]
AB182_23535
Enzymes [BR:
kin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AB182_23535
Transfer RNA biogenesis [BR:
kin03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AB182_23535
Prokaryotic type
tRNA splicing ligases
AB182_23535
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AKL14080
UniProt:
A0AAC8QSC6
LinkDB
All DBs
Position
complement(4237117..4238343)
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AA seq
408 aa
AA seq
DB search
MQHNEFQLLTAQDSAPIKMWTHGVPVEPEAREQLQNTAKMPFIFQHLAVMPDVHLGKGST
IGSVIPTKGAIIPAAVGVDIGCGMIAVRTSLVASDLPDNLSGLRSAIEQAVPHGRTSTRS
GRDKGAWETPPQEVDNHWTMLAARFKRLTDNYPQLLKTNNYQHLGTLGTGNHFIEVCLDE
QQRVWVMLHSGSRGVGNAIGTLFITLAQQDMQQHIANLPDKNLAYFREGSKHYDDYMEAV
SWAQDFARHNREVMMSRVLAALSRIVTKPFMTQQEAVNCHHNYVQKETHFGEEVLVTRKG
AVSAQKGQMGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRTMSRTAAKKRFTVDDQIRA
TAHVECRKDSDVIDEIPMAYKDIDAVMAAQASLVEIVHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgcagcataacgaatttcaactgctgacggcgcaggacagtgcgccgataaaaatgtgg
actcacggggtgccggtagagccagaggcgcgtgaacagttgcagaataccgcgaagatg
ccgtttatttttcagcatctggcggtaatgcccgatgtacatcttggtaaaggttccacc
atcggcagcgtgatcccgaccaaaggggccattatcccggcggcggttggtgtggatatt
ggttgtgggatgatcgccgtgcgcacctcgctggtggcaagcgatttaccggataacctg
agcgggcttcgcagcgcaatcgaacaggcggtgccgcatgggcgtaccagtacacgttcc
ggccgggataaaggggcgtgggaaacgcccccgcaggaagtggataaccactggacaatg
ctggcggcacggtttaagcgtttgacggataactatccgcagctattgaaaaccaataat
tatcagcacctgggaacgctgggtacgggcaaccattttattgaggtctgcctggatgaa
cagcaacgtgtatgggtgatgttacatagcggttcgcgcggtgtgggtaatgccattggt
acgctgtttatcacgctggcccaacaggacatgcagcagcatattgccaacctgccggat
aaaaacctggcctatttcagggaggggagtaagcactatgacgactatatggaagccgtg
tcgtgggcccaggactttgcccgtcataaccgggaagtgatgatgtcgcgcgtactggcg
gcgctgtcgcgtatcgtgacaaaaccgttcatgacccagcaggaggcggtgaattgccac
cataactacgtgcaaaaagagacccattttggcgaagaggtgctggtgacgcgtaaaggc
gcggtctcggcacaaaaaggtcagatggggattattcccggttcgatgggggcgaaaagc
tttatcgtacgtggattgggaaatgaagagagcttctgttcttgtagccacggcgcaggg
cgcacgatgagtcgtacggcagcgaaaaagcgctttacggttgatgaccagattcgggcg
accgctcacgttgagtgtcgtaaagacagcgacgttattgatgaaattccgatggcctat
aaagatatcgacgcggtgatggcggcgcaggcgtcgctggtggagattgttcacacctta
cgtcaggtggtctgtgtaaaaggataa
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