Phytobacter ursingii: AB182_24095
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Entry
AB182_24095 CDS
T03950
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
kin
Phytobacter ursingii
Pathway
kin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB182_24095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kin03019
]
AB182_24095
03400 DNA repair and recombination proteins [BR:
kin03400
]
AB182_24095
Enzymes [BR:
kin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AB182_24095
Messenger RNA biogenesis [BR:
kin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AB182_24095
DNA repair and recombination proteins [BR:
kin03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AB182_24095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
DUF6972
Cas3-like_C_2
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AKL14171
UniProt:
A0AAC8QSK8
LinkDB
All DBs
Position
complement(4356547..4358373)
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AA seq
608 aa
AA seq
DB search
MAQAEVLNLESTALEVLRETFGYQQFRPGQQHIIDTVLGGRDCLVVMPTGGGKSLCYQIP
ALILPGLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQIRLLY
IAPERLMLDNFLEQLTHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQYLPSVPFMAL
TATADDTTRRDIERLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLLRYVHDQRGKSGI
IYCNSRAKVEDTAARLQSRGFSAAAYHAGLEHEVRASVQEKFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYAPEDMAWLRRCLEEKPPGQL
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEACGNCDICLDPPRQYDGLKDAQKAL
SAIYRVNQRFGMGYVVEVLRGANSQRIRDLGHDKLPVYGIGREQSHEHWVSVIRQLIHLG
LVTQNIAQHSALQLTEAARPVLRAEVPLQLAVPRMVALKSRVMQKAAVGNYDRKLFAKLR
KLRKAIADENNVPPYVVFNDATLIEMAEQMPITPGEMLGVNGVGVRKLERFGQEFMALIR
AHVDGDDE
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcaggcggaagtattgaatctggaatcgacagccctggaagttttacgggaaacc
ttcggctaccagcagttccgtccgggtcagcaacatatcattgataccgtgctcggcggc
cgcgactgtctggttgtcatgcctaccggtggcggcaaatcgctctgttatcaaattccg
gcactgattctgcctggtcttacggtggtggtatcgccactgatctcactgatgaaagat
caggttgatcagttactcgctaacggcgttgctgcggcctgtctgaactcaacgcaaagt
cgtgaacaacagcttgaggtgatggctggctgccgcaccgggcaaatccgtctgctgtat
atcgctcccgagcggctgatgcttgataacttccttgagcaactgacgcactggaacccg
gtactgctggcggtcgatgaagcgcactgtatctcccaatggggccatgacttccgtcct
gaatatgccgcactcggtcagcttcgtcagtatctgccatctgtgccttttatggcattg
accgccacggcggatgacaccacacgtcgagatattgaacgtctgctgggattgaacgat
ccgctgattcagatcagcagttttgaccgccccaatatccgctatatgctgatggagaaa
ttcaaaccgctcgatcagcttctccgctatgtacacgaccagcgcggcaagtccggaatt
atttactgcaacagccgggcgaaggtggaagacaccgccgctcgcctgcaaagccggggc
tttagcgctgcggcgtatcatgccgggctggaacacgaggtgcgcgccagcgtgcaggag
aaattccagcgcgacgatctgcaaatcgtggtcgcgactgttgcgttcggtatggggatt
aacaaacccaacgtgcgatttgtggttcacttcgacattccacgtaatatcgagtcttac
tatcaggaaacgggtcgcgccgggcgtgatggcctgcccgctgaggcgatgttgttctac
gcgccggaagacatggcctggctgcgccgttgtcttgaagaaaaaccccccggacagttg
caggatattgagcgccacaagctcaatgcaatgggggcgtttgccgaagcgcaaacctgc
cgccgcctggtcttgctcaattactttggcgaagggcgccaggaagcctgcggtaactgc
gatatttgccttgatccgccacgccagtatgacgggctgaaagatgcacagaaggcgctt
tcggctatctaccgggtgaatcagcgtttcggtatgggctatgtggtagaagtgctgcgt
ggcgccaacagccagcgtatccgcgacctggggcatgacaaactgccggtctacggtatt
ggccgtgagcagagccatgaacattgggtgagtgtcatccgccagcttattcatttgggt
ctggtcacgcaaaacatcgcccagcactccgccttacaactgaccgaagccgcccgcccg
gtgctgcgcgccgaagtaccgctccagttggctgtaccgcgcatggtcgccctgaaatcc
cgcgtgatgcaaaaggcggcggtcggcaactatgaccgcaaactctttgcgaagctacgc
aagttgcgtaaagcgattgccgatgaaaataacgtgccgccgtacgtggttttcaatgac
gcaacgctgattgaaatggccgaacagatgcccattacgccaggcgaaatgctcggcgtt
aacggtgttggcgtccgcaaacttgagcgctttggccaggagtttatggcgctgattcgt
gcccatgttgacggtgatgatgagtag
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