Kitasatospora sp. NA04385: HUT16_21485
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Entry
HUT16_21485 CDS
T08635
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kis
Kitasatospora sp. NA04385
Pathway
kis03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HUT16_21485 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kis03400
]
HUT16_21485 (mfd)
Enzymes [BR:
kis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HUT16_21485 (mfd)
DNA repair and recombination proteins [BR:
kis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HUT16_21485 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
AAA_22
UB2H
Motif
Other DBs
NCBI-ProteinID:
QKW21287
UniProt:
A0A7H8KXD8
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All DBs
Position
4794551..4798183
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AA seq
1210 aa
AA seq
DB search
MSLSGLLDVVVRDAALAEAIEAAATGHRQHLDLVGPPAARPFAIAALARSLAARGGEAGR
PVLAVTATGREAEDLAASLRSLLPPDAVAEFPAWETLPHERLSPRSDTVGRRLAVLRRIV
HPRADDAAAGPVQVVVAPVRSVLQPQVKGLAELEPVALRRGEQHDLGEVSRKLAAAAYAR
VELVEKRGEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEIAEHGLWA
PPCRELLLTDEVRAKAAALAADHPELGEILDKIAQGIAVEGMESLAPVLVDDMELLLDVL
PAGSIAVVCDPERVRTRAADLVATSQEFLAASWVAAAAGADRPIDLEAIDVSAASLWSLA
DVREHAAGIGLPWWSVSPFATSDSTVNDVLARGGAAGWQGDADTLTLGMHAVEAYRGDTA
RAIADARERLAADWRVVMVTEGHGPASRLAEVLGNEGIAARLVADLAEAPTRDVVYVSCG
SIEHGFVDEELKLTVVTETDLSGQRSSTKDMRRMPSRRRNAIDPLALAAGDYVVHEQHGV
GRYVEMVQRTVQGATREYLVLEYAPAKRGHPGDRLFVPTDQLDQVTKYVGGEAPTLHRLG
GADWAKTKQRAKKAVKEIAADLIKLYSARMAAPGHAFGPDTPWQRELEDAFPYAETPDQL
TTIGEVKADMEKSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF
STFAERYANFPVTVKALSRFQTDTEAKAVLEGLFEGSVDVVIGTHRLFSSETRFKDLGLV
IVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPV
LTFVGPYDEKQIAAAVRRELLREGQVFYIHNRVESIDKAAARLKDLVPEARVATAHGQMG
ETQLEKVVVDFWEKEFDVLVSTTIVESGIDISNANTLIVERGDTFGLSQLHQLRGRVGRG
RERGYAYMLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGH
IAGVGFDLYMRMVGEAVAEFRESLEGGGGEPEEEPLEVKIELPVDAHVPHDYAPGERLRL
QAYRSIAAVNAEEDIAQVREELTDRYGKLPEPVENLLLVAGLRLFARRCGIGDITLQGSF
VRFGPVELRESQQLRLNRLYPRTQVKSAARQLLVPRPGSGGRIGGKPLVGRELLSWCAEF
LSTMFEDLKR
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgtccggactgctcgatgtcgtcgtacgggacgccgccctcgccgaggcgatc
gaggcggcggccacggggcacaggcagcacctcgacctggtcggcccgcccgccgcccgg
ccgttcgcgatcgccgcgctggcccgttcgctggccgcccgcggcggcgaggcgggccgg
ccggtgctggccgtgaccgccaccggccgggaggccgaggacctcgcggcgtcgctgcgc
tcgctgctgccccccgacgcggtcgccgagttcccggcctgggagacgctgccgcacgag
cggctctccccgcgttccgacacggtgggccgccggctggccgtgctgcgccggatcgtc
cacccgcgcgccgacgacgcggccgccgggccggtgcaggtggtggtggcgccggtgcgc
agcgtgctgcagccgcaggtgaaggggctggccgagctggagccggtggcgctgcggcgc
ggcgagcagcacgacctgggcgaggtgtcccgcaagctggcggccgccgcctacgcccgg
gtcgaactggtcgagaaacgcggcgagttcgcggtgcgcggcggcatcctggacgtcttc
ccgccgaccgaggagcacccgctgcgggtggagttctggggcgacgacgtcgaggagatc
cgctacttcaaggtcgccgaccagcggtcgctggagatcgccgagcacggcctgtgggcg
ccgccctgccgggagctgctgctgaccgacgaggtgcgggcgaaggccgccgccctggcc
gccgaccaccccgagctgggcgagatcctggacaagatcgcccagggcatcgcggtcgag
ggcatggagtcgctggccccggtgctggtggacgacatggaactgctgctggacgtgctg
ccggccggttcgatcgccgtggtgtgcgacccggagcgggtccgcacccgggccgccgac
ctggtggccaccagccaggagttcctggccgcgtcctgggtggccgcggcggcgggcgcc
gaccgcccgatcgacctggaggcgatcgacgtctcggccgcctcgctgtggtcgctggcg
gacgtccgcgagcacgccgccgggatcggcctgccgtggtggtcggtcagcccgttcgcc
accagcgactccaccgtgaacgacgtcctcgcccgcggcggggccgccggttggcagggc
gatgcggacaccctgaccctgggcatgcacgccgtcgaggcctaccgcggcgacaccgcg
cgggcgatcgccgacgcccgggagcggctggccgccgactggcgggtggtgatggtcacc
gagggccacggcccggcgtcccgactggccgaggtgctcggcaacgagggcatcgcggcc
cggctggtcgccgacctcgccgaggccccgacccgggacgtggtgtacgtctcctgcggc
tcgatcgagcacggcttcgtggacgaggagttgaagctcaccgtcgtcaccgagaccgac
ctgtccggccagcggtcctccaccaaggacatgcgccggatgccgtcccgccgccgcaac
gcgatcgacccgctggcgctggcggccggcgactacgtggtgcacgagcagcacggcgtc
ggccggtacgtggagatggtgcagcgcaccgtgcagggcgccacccgcgagtacctggtg
ctggagtacgcgcccgccaagcgcggccaccccggcgaccggctgttcgtgccgaccgac
cagctcgaccaggtcaccaagtacgtgggcggcgaggcgccgacgctgcaccgcctgggc
ggcgcggactgggcgaagaccaagcagcgggccaagaaggcggtcaaggagatcgccgcc
gacctgatcaagctgtactcggcccggatggcggcccccggccacgccttcggcccggac
accccgtggcagcgcgagctggaggacgccttcccgtacgcggagacgcccgaccagctg
accaccatcggcgaggtcaaggcggacatggagaagtccgtcccgatggaccggctgatc
tgcggcgacgtcggctacggcaagaccgagatcgccgtgagagccgccttcaaggccgtc
caggacggcaagcaggtggcggtgctggtgccgaccacgctgctggtgcagcagcacttc
tcgaccttcgccgagcggtacgcgaacttcccggtcaccgtgaaggcgctgtcccggttc
cagaccgacaccgaggcgaaggcggtgctggagggcctgttcgagggctcggtggacgtg
gtgatcggcacccaccggctgttctcctcggagaccaggttcaaggacctgggcctggtg
atcgtcgacgaggagcagcgcttcggcgtcgagcacaaggagcagctgaagaagctgcgg
gccaacgtggacgtgctgaccatgtccgcgaccccgatcccgcgcaccctggagatggcg
gtcaccggcatccgcgagatgtccaccatcaccaccccgccggaggagcggcacccggtg
ctgaccttcgtcggcccgtacgacgagaagcagatcgccgccgcggtccgccgcgaactc
ctgcgcgagggccaggtgttctacatccacaaccgggtcgagtcgatcgacaaggcggcg
gcccggctgaaggacctggtgccggaggcccgggtggcgaccgcgcacgggcagatgggg
gagacccagctggagaaggtcgtcgtcgacttctgggagaaggagttcgacgtcctggtg
tccaccaccatcgtcgagtccggcatcgacatctccaacgccaacaccctgatcgtggag
cgcggcgacaccttcggcctgtcccagctgcaccagctgcgcggccgggtcggccgcggc
cgcgagcgcggctacgcgtacatgctgtacccgccggagaagccgctcaccgagaccgcg
cacgagcgcctggccaccatcgcccagcacaccgagatgggcgcgggcatgtacgtggcg
atgaaggacctggagatccgcggcgccggcaacctgctgggcggcgagcagtccgggcac
atcgcgggcgtcggcttcgacctctacatgcggatggtcggcgaggcggtcgccgagttc
cgcgagtcgctggagggcggcggcggggagccggaggaggagccgctggaggtgaagatc
gagctgccggtggacgcgcacgtcccgcacgactacgcgccgggggagcggctgcgcctc
caggcgtaccgctcgatcgcggcggtcaacgccgaggaggacatcgcgcaggtccgcgag
gagctcaccgaccgctacggcaagctgcccgagccggtggagaacctgctgctggtggcg
gggctgcggctgttcgcccggcgctgcggcatcggcgacatcacgctgcagggctccttc
gtccggttcgggccggtcgagctgcgggagtcccagcagctgcggctgaaccggctctac
ccgcgcacccaggtcaagtccgccgcccggcagctgctggtgccgcggccgggcagcggc
ggccggatcggcggcaagccgctggtcgggcgggagctgctgtcctggtgcgccgagttc
ctgagcaccatgttcgaggacctcaagcggtag
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