Kitasatospora sp. NA04385: HUT16_25175
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Entry
HUT16_25175 CDS
T08635
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
kis
Kitasatospora sp. NA04385
Brite
KEGG Orthology (KO) [BR:
kis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
kis03016
]
HUT16_25175
Enzymes [BR:
kis01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HUT16_25175
Transfer RNA biogenesis [BR:
kis03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HUT16_25175
Prokaryotic type
tRNA splicing ligases
HUT16_25175
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QKW21912
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Position
5658724..5659917
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AA seq
397 aa
AA seq
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MSYTEVPGVRVPIRMWTDPATVEGQAMQQLRNISTLPWLHGLAVMPDVHLGKGATVGSVI
AMKGAVCPAAVGVDIGCGMTAVKSSLTAKDLPDDLSRLRHRIEQAIPVGRGLHTDPVDPG
KLHGLPTAGWADFWQRFDDIAPDVRWRRERAAQQMATLGGGNHFIELCLDEDGAVWLMLH
SGSRNIGKELAEHHMSIAQSLPHNQGLIDRDLAVFISDTPQMAAYRSDLFWAQEYAKHNR
ALMMALFQDAVRRELPKARASFGEMISCHHNYVAEERYDGVDLLVTRKGAIRAGSGEYGI
IPGSMGTGSYIVKGLGNAASFNSASHGAGRKMSRNAAKKRFTTADLVAQTAGVECRKDSG
VVDEIPGAYKSIEKVIEQQRDLVEVVAHLKQVICVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacaccgaggtacccggcgtccgcgtcccgatccggatgtggaccgacccggcc
accgtcgagggccaggccatgcagcagctgcgcaacatcagcacgctgccctggctgcac
ggcctcgccgtgatgccggacgtccacctgggcaagggcgcgacggtcggctccgtcatc
gcgatgaagggcgcggtctgcccggccgcggtcggcgtcgacatcggctgcgggatgacg
gcggtgaagtcctcgctcaccgcgaaggacctccccgacgacctgtcgcggctgcgccac
cggatcgagcaggccatcccggtcggccgcggcctgcacaccgacccggtcgacccgggc
aagctgcacggcctgcccaccgccggctgggcggacttctggcagcgcttcgacgacatc
gcgcccgacgtgcgctggcggcgcgagcgggccgcccagcagatggccacgctcggcggc
ggcaaccacttcatcgagctctgcctggacgaggacggcgcggtctggctgatgctgcac
tccggttcgcgcaacatcggcaaggagctcgccgagcaccacatgtcgatcgcccagtcc
ctgccgcacaaccagggcctgatcgaccgggacctggcggtcttcatctccgacaccccg
cagatggcggcctaccgctccgacctgttctgggcgcaggagtacgccaagcacaaccgg
gcgctgatgatggccctgttccaggacgcggtccgccgcgaactgcccaaggcccgggcc
tcgttcggcgagatgatctcctgccaccacaactacgtggccgaggagcgctacgacggc
gtcgacctgctcgtcacccgcaagggcgcgatccgggccggctccggcgagtacggcatc
atcccgggctcgatgggcaccggctcgtacatcgtgaagggcctgggcaacgcggcctcg
ttcaactcggcctcgcacggcgcgggccggaagatgagccgcaacgccgccaagaagcgc
ttcaccacggcggacctggtggcgcagacggccggcgtggagtgccgcaaggactccggc
gtggtcgacgagatccccggcgcgtacaagtcgatcgagaaggtcatcgagcagcagcgg
gacttggtcgaggtggtcgcgcacctcaagcaggtgatctgcgtgaagggctga
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