Kitasatospora sp. MMS16-BH015: CFP65_4644
Help
Entry
CFP65_4644 CDS
T05366
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kit
Kitasatospora sp. MMS16-BH015
Pathway
kit03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CFP65_4644
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kit03400
]
CFP65_4644
Enzymes [BR:
kit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CFP65_4644
DNA repair and recombination proteins [BR:
kit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CFP65_4644
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
AAA_22
UB2H
Motif
Other DBs
NCBI-ProteinID:
AUG79375
UniProt:
A0A2H5B4P7
LinkDB
All DBs
Position
5405143..5408757
Genome browser
AA seq
1204 aa
AA seq
DB search
MSLAGLLDVVVRDAALTEAIEAAATGHRPHLDLVGPPAARPFVVAALARSLAREAGESGR
PVLAVTATGREAEDLAASLRSLLPPDAVAEYPAWETLPHERLSPRSDTVGRRLAVLRRIV
HPRADDPAAGPVQVIVAPVRSVLQPQVKGLAELEPVALQRGEQHDLDAVARRLAAAAYAR
VELVEKRGEFAVRGGILDVFPPTEEHPLRVEFWGDEVEEIRYFKVADQRSLEIAEHGVWA
PPCRELLLTEEVRARAAALAERHPELGEILDKIAQGIAVEGMESLAPVLVDDMELLMDVL
PIGSVAVVCDPERVRTRAADLVATSQEFLHASWVAAAAGGDRPIDLETIDVSAASLRSLA
EVREHAAEIGLPWWSVSPFATSDSALDGPLEFDASTLTLGMHAVEAYRGDTARAIADAKE
RLAADWRVVMVTEGHGPASRLAELLGNEGIPARLVADLTEPPTRDVVYVSCGSIEHGFVD
ETLKLTVVTETDLSGQKSSTKDMRRMPSRRRNAVDPLALQAGDYVVHEAHGVGRYVEMVQ
RTVQGATREYLVLEYAPAKKGHPGDRLFVPTDQLDQVTKYVGGEAPTLHRLGGADWAKTK
QRAKKAVKEIAADLIKLYSARMAAPGHTFGPDTPWQRELEDAFPYAETPDQLTTIAEVKS
DMEKSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFSTFAERYA
NFPVNVKALSRFQTDAEAKAVLEGLFEGSVDVVIGTHRLFSSETRFKDLGLVIVDEEQRF
GVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYD
EKQISAAIRRELLREGQVFYIHNRVESIDKAAARLKDLVPEARIATAHGQMGESQLEKVV
VDFWEKEFDVLVSTTIVESGIDISNANTLIVERGDTFGLSQLHQLRGRVGRGRERGYAYM
LYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDL
YMRMVGEAVAEFRDSLASGGAAPEEEPLEVKIELPVDAHVPHDYAPGERLRLQAYRSIAA
VNSEEDIAQVREELKDRYGKLPEAVENLLMVAGLRLYARRCGISDITLQGSNVRFGPVEL
RESQELRLNRLYPRSQVKATARQALVPRPGSGRIGSKPLVGRELLQWCTEFLTTIFDDLA
GAKK
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgagccttgccggactgctcgatgtcgtcgtacgggacgccgccctcaccgaggcgatc
gaggcggcggccaccggccaccgcccgcacctcgacctggtcggcccgcccgccgcgcgg
ccgttcgtggtagccgcgctggcccgttcgctggcccgggaggccggcgagagtggccgg
cccgtcctcgcggtgaccgccaccggccgggaggcggaggacctggcggcgagcctgcgc
tcgctgctgccgccggacgcggtggccgagtacccggcctgggagacgctgccgcacgag
cggctctcgccccgctcggacaccgtcggccgccggctcgcggtgctgcgccggatcgtg
caccccagggcggacgacccggccgccgggccggtgcaggtgatcgtggcgccggtccgc
tcggtgctccagccgcaggtcaaggggctggcggagctggagccggtcgcgctgcagcgc
ggcgagcagcacgacctcgacgcggtggcccggcggctggcggctgccgcgtacgcccgg
gtcgagctggtggagaagcgcggcgagttcgccgtgcgcggcggcatcctggacgtcttc
ccgcccaccgaggagcacccgctgcgggtggagttctggggcgacgaggtcgaggagatc
cggtacttcaaggtggccgaccagcgctcgctggagatcgccgagcacggggtctgggcg
ccgccctgccgggagctgctgctcaccgaggaggtgcgggcccgggccgccgcgctggcg
gagcgccacccggagctgggcgagatcctggacaagatcgcccagggcatcgccgtggag
ggcatggagtcgctcgcccccgtcctggtggacgacatggaactgctgatggacgtgctc
ccgatcgggtccgtcgcggtggtctgcgaccccgagcgggtccgcacccgggccgccgat
ctggtggcgaccagtcaggagttcctgcacgcctcctgggtggccgcggccgccggcggc
gaccggccgatcgacctggagaccatcgacgtctcggccgcgtcgctccgctcgctggcc
gaggtgcgcgagcacgcggccgagatcgggctgccctggtggtcggtgagcccgttcgcg
accagcgactcggccctcgacggcccgctggagttcgacgcctcgaccctgacgctcggc
atgcacgccgtggaggcgtaccggggcgacaccgcgcgggcgatcgccgacgccaaggag
cggctggccgccgactggcgggtggtcatggtgaccgagggccacggcccggccagccgg
ctggccgagctgctcggcaacgagggcatcccggcccggctggtcgccgacctgaccgag
ccgccgacccgggacgtggtctacgtctcctgcggctcgatcgagcacggcttcgtcgac
gagacgctcaagctcaccgtggtcaccgagaccgacctctccggccagaagtcctccacc
aaggacatgcgccggatgccgtcccgccgccgcaacgccgtggacccgctggccctgcag
gccggcgactacgtggtgcacgaggcgcacggcgtgggccggtacgtggagatggtgcag
cgcaccgtgcagggcgcgacccgcgagtacctggtgctcgagtacgccccggcgaagaag
ggccaccccggcgaccggctcttcgtgcccaccgaccagctcgaccaggtgaccaagtac
gtcggcggcgaggccccgaccctgcaccggctcggcggcgcggactgggccaagaccaag
cagcgggccaagaaggccgtcaaggagatcgccgccgacctgatcaagctctactcggcc
cggatggcggcccccggccacaccttcggcccggacaccccctggcagcgcgagctggag
gacgccttcccgtacgcggagacgcccgaccagctgaccaccatcgccgaggtcaagtcg
gacatggagaagtccgtcccgatggaccgcctgatctgcggcgacgtcggctacggcaag
accgagatcgcggtgcgggccgccttcaaggccgtccaggacggcaagcaggtggccgtg
ctggtgccgaccacgctgctggtgcagcagcacttctccaccttcgccgagcggtacgcc
aacttcccggtgaacgtgaaggcgttgtcgcggttccagaccgacgccgaggcgaaggcc
gtgctggagggcctgttcgagggctcggtggacgtggtgatcggcacccaccggctgttc
tccagcgagacccggttcaaggacctcgggctggtgatcgtcgacgaggagcagcgcttc
ggcgtcgagcacaaggagcagttgaagaagctgcgggccaacgtggacgtgctgaccatg
tcggccaccccgatcccgcgcaccctggagatggccgtcaccggcatccgcgagatgtcc
accatcaccaccccgccggaggagcggcacccggtgctgaccttcgtcggcccctacgac
gagaagcagatctcggcggcgatccggcgcgaactgctccgcgagggccaggtcttctac
atccacaaccgggtggagtcgatcgacaaggcggcggcccggctgaaggacctggtgccc
gaggcgcggatcgccaccgcgcacgggcagatgggggagagccagctggagaaggtggtg
gtcgacttctgggagaaggagttcgacgtgctggtctccaccacgatcgtcgagtccggc
atcgacatctccaacgccaacacgctcatcgtcgagcgcggtgacaccttcggcctctcc
cagctgcaccagctgcgcgggcgggtcggccgcgggcgcgagcgcgggtacgcgtacatg
ctctacccgccggagaagccgctgaccgagaccgcccacgagcggctggccaccatcgcc
cagcacaccgagatgggcgccggcatgtacgtggcgatgaaggacctggagatccgcggc
gcgggcaacctgctcggcggcgagcagtccgggcacatcgcgggcgtcggcttcgacctc
tacatgcggatggtcggcgaggccgtggccgagttccgggactcgctggcgagcgggggt
gcggcgccggaggaggagccgctggaggtgaagatcgagctgcccgtggacgcccacgtg
ccgcacgactacgcccctggcgagcggctgcgcctgcaggcgtaccgctcgatcgcggcg
gtcaactccgaggaggacatcgcgcaggtccgcgaggagctcaaggaccggtacggcaag
ctgccggaggcggtggagaacctgctgatggtggccgggctgcggctctacgcccgccgc
tgcgggatctcggacatcaccctgcagggctcgaacgtccggttcgggccggtggagctg
cgggagtcgcaggagctgcggctgaaccggctctacccgcgcagccaggtcaaggcgacg
gcgcgtcaggcgctggtgccccggccgggcagcgggcggatcggcagcaagccgctggtc
gggcgggagctgctgcagtggtgcaccgagttcctgaccacgatcttcgacgatctggcg
ggggcgaagaagtag
DBGET
integrated database retrieval system
