Kingella kingae: KKKWG1_1263
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Entry
KKKWG1_1263 CDS
T04151
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kki
Kingella kingae
Pathway
kki03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kki00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KKKWG1_1263 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kki03400
]
KKKWG1_1263 (mfd)
Enzymes [BR:
kki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KKKWG1_1263 (mfd)
DNA repair and recombination proteins [BR:
kki03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KKKWG1_1263 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
CRZ20442
LinkDB
All DBs
Position
I:complement(1210401..1213784)
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AA seq
1127 aa
AA seq
DB search
MNFLIPKPTQKTFWTDLSSGSLPYLLTQNLPKNQLVIVLTKDSESAQRLHEAWQFFRPHD
NGSFLPDWETLPYEHFSPHQDLVSERLSVLWQLKNKQINALFLPVATAMQKVAPTSFIFG
RTFWLKVGQNVNIDTLRENLVDAGYSAVSNVVAAGEFAVRGGIVDLFPMGSEFPYRIDLF
DKEIDTIKTFDPETQRTIQSIDEIRLLPAHEFPTDSNTQKIFRSRFREEIDGDFANAVVY
KSVGNGQFGAGVEYYLPLFFENGCVQLFDYIDDDAIVVCTDDVHAYANRFWGDVKSRYQM
AQGDSHYPPLEPQHLFLSPDQFAGCLKKFPQIWTQHSSVHDLPNVAVNRQSDEPLRNLAN
FVNGFDGKILVCAESLGRRETMSAFFRQHGLELQHVENWREFISTSSLQLGACVAPLSQG
FRLPENMAVITENDLYQYVSKPRTRRRKHASVSDTTLRDLAEINIGDPVVHQEHGIARYM
GLTVLDFGDGANEMMLLEYANEAQLYVPVAQLHLISRYAGNASEKIALHKLGTNAWSKAK
HKAAEKARDTAAELLNLYAQRAAQTGFKFEINELDYQAFADGFGYEETEDQAAAILAVMK
DLTQAKPMDRLICGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQYAKNFADRFA
DFPVKTAALSRFNSSKETKATLDGMANGTVDIVIGTHKLVQDDIVFKNLGLVIIDEEHRF
GVRQKEQLKRLRANVDLLTLTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFS
EGSIQEAVLRELKRGGQVFFLHNEVNTIENMRDKLENLLPEARIGVAHGQLRERELEQVM
RDFLNQKFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYL
LTPEFITKDAEKRLDAIAAADELGAGFALAMQDLEIRGAGEILGEGQSGEMMQVGLTLYT
EMLKQAVRDLKKGRVPDLDAPLGVSTEIKLHAPALLPESYCPDIHERLVLYKRLAACENM
NEINAIFEELVDRFGLPETPVKTLVDSHRLRLAAKALGVVSVDVNAAAATLTFGKYMTVE
PAHIIGLMQREKGWRMAGADKLRVEIDGETVEQRVDAVSRIFRLLGK
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcctcattcccaaacccacgcaaaaaactttttggacagatttgtcttcaggc
agcttgccgtatcttctcacacaaaatttaccgaaaaatcaattagtcatcgtcttaacc
aaagacagcgaatccgctcaacgcctacacgaagcatggcaatttttccgcccacacgac
aacgggtcatttctccccgattgggaaacgctgccgtacgagcatttttcgccgcatcaa
gatttggtgtcggaacgcttgtcggttttgtggcaattaaaaaataaacaaatcaacgct
ttgtttttgccagtcgccaccgccatgcaaaaagttgcgccaacttcgtttatttttgga
cgcacgttttggctgaaagttgggcagaatgtgaatattgacactttgcgcgaaaatctc
gtggacgcaggttacagcgcggtttccaacgtggtggcggctggcgaatttgcggtgcgc
ggtgggattgtggatttgtttccaatgggaagtgagtttccgtatcgcattgatttattt
gataaagagattgatacgattaaaacgtttgaccccgaaacgcaacgaacaatccaatcc
attgatgaaatccgcctattgccagcgcacgaatttcccaccgacagcaacacgcaaaag
attttccgcagccgtttccgcgaagaaattgacggcgattttgccaacgcggtggtttat
aaatcggtcggcaacggacaatttggcgcaggcgtggaatattatttgccgctctttttt
gaaaatggctgtgttcaactgtttgattatattgatgatgatgcgattgtggtttgcacg
gacgatgttcatgcctacgccaaccgtttttggggcgatgtaaaatcgcgctaccaaatg
gcgcagggtgattcgcattatccgccgcttgaaccgcagcatttgtttttatcgcccgac
caatttgcaggctgcctgaaaaaatttccgcaaatttggacgcagcattccagcgttcac
gatttgccgaatgtggcggttaatcgtcaatcggacgagcctttacgcaatttagcgaat
tttgtgaatgggtttgacggcaaaattttagtttgcgcggaaagtttggggcggcgcgaa
acaatgtcggcgtttttcaggcagcatggtttggaattgcaacacgttgaaaattggcgt
gaatttatttcaacaagcagcctgcaacttggggcgtgtgtcgcgcctttgtcgcaaggt
ttcaggctgcctgaaaatatggcagttattactgaaaacgatttatatcaatatgttagc
aaaccacgcacacgccgccgcaaacacgccagcgtgtccgacaccacgttacgcgatttg
gcagaaatcaacatcggcgacccagtcgtccaccaagaacacggcattgcgcgatacatg
ggcttgactgtattggatttcggcgatggcgcaaatgaaatgatgttgctggaatacgcc
aatgaagcgcaactctatgttcctgttgcacaattacatttaatcagccgctacgcaggc
aacgccagcgaaaaaatcgcgctgcacaaactcggcacaaacgcttggagcaaagccaaa
cacaaagccgccgaaaaagcacgcgacaccgccgccgaattgctcaatttatacgctcaa
cgcgccgcacaaactggttttaaatttgaaatcaatgaattggattatcaagcattcgcg
gacggatttggctacgaagaaaccgaagaccaagccgccgccattttagccgtgatgaaa
gacttgacccaagccaaaccaatggataggctgatttgcggcgatgtcggtttcggcaaa
acggaagtggcgttacgcgccgcgtttgtggcggttatgggcggcaaacaggtggcggtg
cttgcgcctaccacgttgctggttgaacaatacgcgaaaaattttgctgaccgtttcgcc
gattttcctgtgaaaacggcggcgttgtcgcgttttaacagcagtaaagagacgaaagcg
acacttgacggcatggcaaatggcacggtggatattgtgattggcacgcataaattggtg
caagatgatattgtgtttaaaaacttgggtttagtgattattgacgaagaacaccgtttc
ggcgtgcgccaaaaagagcaactgaaacgacttcgcgccaatgtggatttactaactttg
accgccacgccgattccgcgtacgttgagtatggcgttggagggcttgcgtgatttttcg
ctgattacgactgcaccgagccgccgtcttgccgtcaaaacatttgtgaaaccgtttagc
gagggcagtattcaggaagccgttttgcgtgaattgaaacgcggcggacaagtttttttc
ctgcataatgaagtgaatacaattgaaaatatgcgcgacaaattggaaaacttgctgcct
gaagcgcgaattggcgtggcgcatggtcagttgcgtgaacgtgagttggaacaggtgatg
cgtgactttttaaatcaaaaattcaatgtgttactgtgttccacaatcattgaaacggga
attgacattccgaacgccaacacaattatcatcaatcgcgccgataaatttggcttggcg
caactgcaccaactacgtgggcgcgtggggcgcagtcatcatcaggcgtatgcgtatttg
ctcacgcccgaatttatcacaaaagacgcggaaaaacgcttggacgcgattgcggcggcg
gacgaattgggcgcgggttttgcgttggcgatgcaggatttggaaattcgtggcgcgggc
gaaattttgggcgaggggcaatcaggcgagatgatgcaagttggtttgacgctgtacacg
gagatgctaaaacaggcggtgcgcgatttgaaaaaagggcgtgtgcctgatttggacgcg
ccgcttggcgtgagtacggagattaaattacacgcgcctgcgttgctgcctgaaagttat
tgccctgatattcacgagcgtttggtgttgtacaaacgcttggcggcttgcgaaaatatg
aatgaaatcaatgcaatttttgaagaattggtggatagattcgggctgcctgaaacgcct
gtgaagactttggtggacagtcatcggctgcgtttggcggcgaaagcgttgggtgtggtg
tcggttgatgtgaatgcggcggcggcgactttgacgtttggcaaatatatgacggttgag
ccagcgcatattatcggcttgatgcagcgcgaaaagggctggcgcatggctggggcagat
aagttgcgcgtggaaattgacggcgagacggtggagcagagagttgatgcggtttcgcgg
atttttagattgttggggaaatga
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