Kangiella koreensis: Kkor_0090
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Entry
Kkor_0090 CDS
T00973
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
kko
Kangiella koreensis
Pathway
kko03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kko00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Kkor_0090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kko03019
]
Kkor_0090
Enzymes [BR:
kko01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Kkor_0090
Messenger RNA biogenesis [BR:
kko03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Kkor_0090
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
CMS1
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ACV25512
UniProt:
C7R681
LinkDB
All DBs
Position
complement(92443..93747)
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AA seq
434 aa
AA seq
DB search
MPFSKLDLIQPLLDALHKSGYKTPSPIQQKVIPLILNGQDVMAAAQTGTGKTAGFSLPIL
QRLSEGKRPSANSARCLILTPTRELAEQVHQSVQKYAANLHLNSIVVYGGVKINPQMLKL
RRGTDVLVATPGRLLDLMEQNAVRFNDLEFLVLDEADRMLDMGFLPSIKRIIGKLPKKRQ
TLLFSATFSESIKAISQQFLTNPSLVETEQTNTTAATVKQWIHPVDKKQKPALLSYLIGH
HRWDQLLVFVRTRRGANKLSVDLEKRGIKATAIHGGKSQGARNRALSEFKSGKVTVLVAT
DVAARGLDIEQMPLVINYDLPNVAEDYVHRIGRTGRAGEKGTAISLVSADEVDDLRAIQD
LIRKPLERRFVEDYEPQHVLPETPLKSAGKKKPHKKKLAKAKLNQANKKPGAVKNKGKPR
KNKPANKSGKKSEH
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgcctttttcgaaactcgatttaattcagcccttactagacgctctacacaagagtggt
tataaaaccccgtccccgatccagcaaaaagttattcctttaatcctgaatggtcaggat
gtgatggctgctgcgcagactggcaccggtaaaactgctggtttttcactccctattttg
caacgtctgtctgagggtaaaaggccttccgcgaattcggcacgttgcctgatattgacg
ccgacccgagagctggccgagcaggttcatcaaagcgtgcaaaagtacgcggcgaatttg
catctgaattcaatcgtggtctacggtggcgttaagattaatccgcaaatgttgaagctg
cgtcgcggtactgatgtgctagtcgcaactccgggcagattgttggatttgatggaacag
aacgccgtccgttttaacgatcttgaatttctggttctggatgaagcggaccgaatgctc
gatatgggtttcctccccagtattaaacgcatcattggcaaacttcccaagaagcgtcaa
acattattgttttccgctactttctcggaatcaatcaaagcgataagccagcagtttcta
accaatccctctttggtcgaaactgagcaaaccaataccacggcagcaacagtcaagcag
tggattcatccagtcgacaaaaaacagaaaccggctttactgagctatcttatcggtcac
catcgctgggatcagttgctggtctttgtccgaacgcgcagaggcgccaataaactcagt
gttgatcttgaaaagcgtggcattaaagcaacagccattcatggcggtaaaagtcagggc
gcacgtaatcgcgcactttctgagtttaaatctggaaaggtgactgttttagtggcaact
gacgtggcagcccgtggtctggatatcgaacagatgccattagttattaactatgactta
ccgaatgtagcagaggattacgtccaccgcattggtcgtactggacgggcgggcgaaaaa
ggcactgccatatcgctggtcagcgccgatgaagttgatgatttgcgtgccatccaggat
ctaatccgcaaacccttggaacgaagatttgtagaagattacgaaccgcaacatgtgcta
cctgaaacaccacttaagagtgccggaaagaaaaagccgcacaaaaagaaattagctaaa
gctaaactgaaccaagcgaataaaaagcccggcgcagtgaaaaacaaaggtaagcctaga
aaaaataagcctgctaataagagtggaaagaaaagcgagcactag
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