Klebsiella sp. M5al: BWI76_02575
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Entry
BWI76_02575 CDS
T09148
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
klm
Klebsiella sp. M5al
Pathway
klm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
klm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BWI76_02575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
klm03019
]
BWI76_02575
03016 Transfer RNA biogenesis [BR:
klm03016
]
BWI76_02575
Enzymes [BR:
klm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BWI76_02575
Messenger RNA biogenesis [BR:
klm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BWI76_02575
Transfer RNA biogenesis [BR:
klm03016
]
Prokaryotic type
tRNA degradation factors
BWI76_02575
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
TFIIE_beta
Rho_RNA_bind
AlkZ-like
Motif
Other DBs
NCBI-ProteinID:
ARI06491
LinkDB
All DBs
Position
526736..529183
Genome browser
AA seq
815 aa
AA seq
DB search
MSQDPFLDRESEKYANPIPSREFILDHLAKREKPASRDELATELNIEGEEQQEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGIVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTGQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EQIMGARMGFVVVVELTQRPTRRTKAIGKIVEVLGDNMGTGMAVDMALRTHEIPYVWPPA
VEKQVAGLKEQVPEEAKKGRVDLRSLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPGTPLDGEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
AKGRLTGFKFYEAVMSSHARLTYTKVWHMLQGDQDLREQYAPLVKHIEELHNLYKVLDGA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAEEP
ALFRIHDKPSTEAITAFRSVLAELGLELPGGNKPEPRDYAELLTSIADRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAKEQGHKGNSTETG
GWHYSMDEMLQLGAHCSMTERRADEATRDVSDWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVRVEAVNMDERKI
DFSLISSERAPRNVGKTEREKAKKGAGGKSSGRRRQAGKQVNFEPDSAFRKQKGQSQPKS
AQPKGEKKAKKPSEKTQKIAAATKAKRAAKKKIAE
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttcctggaccgcgaatctgaaaaatacgctaatccaatcccgagc
cgggaatttatcctcgatcatttagcaaaacgcgaaaaaccggctagccgagatgagctg
gcaacagagctgaatattgaaggcgaagaacaacaagaagcattgcgccgcagattgcgc
gcaatggaacgcgatggtcagctggtctttacgcgtcgtcagtgctatgcgctgccggaa
cgtcttgacctgctgaaaggtatcgttattggccatcgcgatggctatggcttcctgcgc
gtggaaggccgtaaagatgacctgtatctgtcgtctgagcagatgaaaacctgcattcac
ggcgatcaggtgctggcgcagccgctgggcgccgaccgtaaaggccgtcgggaagcacga
attgtccgcgtactggtgccaaaaacgggccagattgtgggccgctactttaccgatgca
ggcgtcggctttgtggtaccggatgacagccgtttaagcttcgatatcctgatccccccg
gaacagattatgggcgcgcgtatgggctttgtcgtggtggttgagctgacccagcgtcca
acccgccgcactaaagcgatcggtaaaatcgttgaagtgctcggcgacaatatggggacc
ggcatggcggtcgatatggccctgcgcacccatgaaatcccctacgtctggccgccagcg
gtcgaaaaacaggtcgccggcctgaaagaacaggtaccggaagaggcgaaaaaagggcgc
gttgatttacgcagcctgccgctggtcaccattgatggcgaagacgcccgcgactttgat
gatgccgtgtactgcgagaagaaacgcggcggcggctggcgtctgtgggtggcgatcgcc
gatgtgagctactacgtgcgtccggggacgccgctggatggcgaagcgcgcagccgcggc
acctcggtctacttcccgtctcaggtggttcccatgctgcctgaagtgctctctaacggc
ctgtgttcactgaatccccaggtcgacagactctgtatggtttgcgaaatgaccatttca
gccaaggggcgtctgaccggcttcaaattctacgaagcggtgatgagctcccacgcccgt
ctgacctataccaaagtctggcatatgctgcagggtgaccaggatctgcgcgagcagtac
gcgccgctggttaagcatattgaagagctgcataacctttacaaagtgctggacggcgcg
cgcgaagagcgcggcggtatctcatttgagagtgaagaagctaaattcatcttcaatgct
gaacgccgtattgaacgcattgaacagactcagcgtaacgatgcgcacaagctgattgaa
gagtgcatgatcctggcgaacatttccgctgcgcgcttcgttgagaaggccgaggaaccg
gccctgttccgtatccatgacaaaccaagcaccgaagcgattaccgccttccgttcggtt
ctggcggagctggggcttgagctgcctggcggcaacaagccggagccgcgcgactatgcg
gaattactgacgtctatcgccgatcgtccggatgcggagatgctgcaaaccatgctgctg
cgctcgatgaaacaggcgatatacgacccggaaaatcgcggtcactttggcctggcgctg
caatcctacgcccacttcacctcgccgattcgccgctatcctgacctttctctgcatcgt
gcgatcaagtatttactggcgaaagagcagggacataaaggcaacagcaccgagaccggc
ggctggcactacagcatggatgagatgctgcagctgggggcgcactgttcgatgaccgaa
cgccgtgctgatgaagcgacgcgcgatgtttcggactggctgaagtgtgatttcatgttg
gatcaggtcggtaacgtctttaagggcgtgattgccagcgtgaccggctttgggttcttc
gtccgtctggatgagctgtttattgacggtctggtgcacgtctcttccctcgataacgac
tactaccgcttcgatcaggtagggcagcgtctgatcggtgaatccggcggtcagacctat
cgtttgggcgatcgtgtagaagtgcgcgttgaagcggtcaacatggacgagcgtaaaatt
gatttctcgcttatctccagcgaacgcgcgccgcgcaacgtcggtaaaaccgagcgtgaa
aaggcgaagaaaggcgccggaggtaaatcgtccgggcgccgccgccaggcgggcaagcag
gtgaacttcgagccagatagcgcattccgcaagcagaaaggccaatctcagccgaagtcc
gctcagccaaaaggcgagaagaaagcgaagaagccgtcggagaaaacccagaagatcgcc
gcagcgaccaaggccaagcgcgcggcgaaaaagaaaatagctgagtaa
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