Pantoea rwandensis: LH22_01150
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Entry
LH22_01150 CDS
T03331
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
kln
Pantoea rwandensis
Pathway
kln03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
kln00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LH22_01150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kln03021
]
LH22_01150
03400 DNA repair and recombination proteins [BR:
kln03400
]
LH22_01150
Enzymes [BR:
kln01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LH22_01150
Transcription machinery [BR:
kln03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LH22_01150
DNA repair and recombination proteins [BR:
kln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LH22_01150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Crb2_Tudor
Motif
Other DBs
NCBI-ProteinID:
AIR84138
LinkDB
All DBs
Position
complement(258073..262296)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLEKRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDKVNARGEGMVLTGPKEAERVYRAG
LAELHARVKVRITEYSKNEQEEFVAKTSLIDTTIGRAILWMIVPKGLPYSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPAKKAEIVAEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVSKAMMDNLQTETVINRHGEEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTFEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILIPRNTLIDEHWCDVIEENSVDAIKVRSVVGCETDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGTIKL
TNAKSVTNSSGKLVIVSRNVELKMIDEFGRTKESYKVPYGAMMAKGDGEQVAAGETVANW
DPHTMPVITEVGGFIRFTDMIDGQTITRQTDDLTGLSSLVVLDSAERTAGGKDLRPALKI
VDANGNDVLIPGTDMPAQYFLPGKAIVQLEDGVKISAGDTLSRVPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE
GERVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKATIASAGSTEFLEGEQAEYSRIKIANRDLEANGKIGATFMRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRSVGEAPV
APQVTADEASASLAELLNAGLGGSDDE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aagatcgctctggcctcgccagacatgatccgttcatggtcttttggtgaagttaaaaag
ccagagaccattaactaccgtaccttcaagccggagcgtgacggtcttttctgcgcccgt
atctttgggccggtaaaagattacgaatgcctgtgcggtaagtacaagcgtttgaaacat
cgcggcgtaatctgtgagaagtgtggcgttgaagttacacagaccaaagtgcgtcgtgag
cgcatgggccacattgaactagcttcaccgactgcgcacatttggttcctgaaatcactg
ccttcgcgtatcggcttgctgctggatatgccactgcgtgatatcgagcgcgtactgtac
ttcgaatcatatgttgtgatcgaaggcggtatgaccaacctggaaaaacgtcagattctg
accgaagagcagtaccttgacgcgctggaagagttcggtgacgaattcgacgcgaagatg
ggtgcggaagctatccaggcgctgctgaaaaatatggatctggagcaagagtgcgagcag
ctgcgtgaagagctgaacgaaaccaactccgagaccaaacgtaaaaagctgaccaagcgt
atcaagctgctggaagcgtttgttcagtctggcaacaagccagagtggatgatcctgacc
gttctgccggttctgccgccagatctgcgtccgctggtaccgctggatggtggtcgtttc
gctacgtcggatctgaacgatctgtaccgtcgcgttatcaaccgtaacaaccgtctgaaa
cgtctgctggatctggctgcgccagatatcatcgtacgtaacgaaaagcgtatgctgcag
gaagcggtagatgccttgctggataacggccgtcgcggtcgtgccatcactggctctaac
aaacgtcctctgaaatctttggccgatatgatcaaaggtaagcagggtcgtttccgtcag
aacctgttgggtaaacgtgttgactactctggtcgttctgtgatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcactggagctgttcaaaccgttc
atctacggcaagctggaactgcgtggcctcgcgaccaccatcaaagctgctaagaagatg
gttgagcgtgaagaagctgtcgtttgggatatcctggacgaagtgatccgcgaacatcca
gtactgctgaaccgtgcaccaaccctgcaccgtttgggtatccaggcattcgaacctgtt
ctgatcgaaggtaaagcgatccagctgcacccgctggtttgtgcggcatataacgccgac
ttcgatggtgaccagatggcagttcacgtaccgctgacgctggaagctcagctggaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtcacctgcgaacggcgagccaatcatc
gttccttctcaggacgttgtactgggtctgtactacatgacccgtgacaaagtgaatgcg
cgtggcgaaggcatggtgctgactggcccgaaagaagctgagcgtgtttatcgcgctggc
ctggccgagttgcatgctcgcgttaaagtgcgtatcaccgagtacagcaaaaacgaacaa
gaagagttcgtcgcgaaaaccagcttaatcgacaccaccattggtcgtgcgattctgtgg
atgatcgtgccgaaaggtctgccttactccatcgtcaaccaggcgctgggtaagaaagct
atctctaagatgctgaacacctgttaccgcatcctgggcctgaagccgaccgttatcttc
gctgaccagaccatgtacaccggctttgcttacgcagcccgttcaggtgcctctgtaggt
atcgacgacatggtgatcccggctaagaaagcggaaatcgtggcagaagcagaagcggaa
gttgctgagattcaggaacagttccagtctggtctggttactgctggcgaacgttacaac
aaagtcatcgatatctgggccgcagcgaacgaacgcgtttccaaggcgatgatggacaac
ctgcaaaccgaaaccgtgattaaccgtcacggcgaagaagagcagcaagtctcgttcaac
agcatctacatgatggccgactccggtgcgcgtggttctgcagctcagattcgtcagctg
gccggtatgcgtggtctgatggctaagccagatggctcaatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctcgacgcacggtgcgcgt
aaaggtcttgcggataccgcactgaaaaccgctaactccggttatctgacgcgtcgtctg
gtagacgttgcgcaggacttggtggtgaccgaagacgactgtggtactttcgaaggcatc
atgatgactccggttatcgaaggtggcgacgttaaagaaccactgcgtgagcgtgtactg
ggtcgtgtgaccgcagaagacgtgctgaagccaggtactgctgacattctgatcccgcgt
aatacgctgatcgatgagcactggtgtgatgtgatcgaagagaattcggtcgatgccatt
aaagtgcgttctgttgttggttgtgaaaccgactttggtgtgtgtgcacactgctacggt
cgcgacctggctcgtggtcacatcatcaacaaaggtgaggccatcggcgttatcgcagca
cagtccatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcatccaggtgaagaacaaaggtactatcaagctg
accaacgcgaagtctgtaaccaactcctccgggaaactggttatcgtctctcgtaacgtt
gagctgaagatgatcgatgaattcggtcgtaccaaagagagctataaagtcccttacggc
gcgatgatggccaaaggtgatggcgagcaggttgccgcgggcgaaaccgtagcaaactgg
gatccgcataccatgccagttattactgaagtgggcggtttcattcgcttcactgacatg
attgatggtcagacgattactcgtcagactgatgacctgactggtctgtcatcgctggtg
gttctggattctgcagaacgtactgcgggcggtaaagatctgcgtcctgcgctgaaaatt
gttgatgccaacggaaatgatgttctgattccaggtaccgacatgccagctcagtacttc
ctgccgggcaaagcaattgtgcagctggaagatggcgttaagatcagtgctggtgacacc
ctgtctcgcgtacctcaggaatctggcggtaccaaggacatcaccggtggtctgccacgc
gttgctgacttgttcgaagcgcgtcgtccgaaagagccagccattctggccgagatcagc
ggtattatctcgttcggtaaagagaccaaaggcaagcgtcgtctggtgattacgccagtt
gatggtagcgatccgtacgaagagatgattccgaaatggcgtcagctgaacgtattcgaa
ggtgagcgtgttgaacgtggtgacgttgtttctgacggcccagaatctccacacgatatc
ctgcgtctgcgtggcgtccatgctgtgacccgttacatcactaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacatcgaagtcatcgtgcgtcagatg
ctgcgtaaagcaaccatcgccagcgcgggcagcaccgagttcctggaaggtgagcaggct
gaatactctcgcatcaagatcgcgaaccgcgacctcgaagcgaacggcaaaattggcgca
acctttatgcgcgatctgctgggtatcaccaaagcttctctggcaaccgaatcgttcatc
tctgcagcatcgttccaggagaccacacgtgtcctgaccgaagcagcagttgcaggcaag
cgcgatgaactgcgcggcctgaaagagaacgtgatcgtgggtcgtttgatcccggccggt
accggttatgcttaccatcaggatcgtatgcgtcgccgttctgtaggtgaagcaccggtt
gcaccgcaggtcactgcggatgaagcctctgcgagcctggctgaactgctgaacgccggt
cttggcggtagcgacgacgaataa
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