Pantoea rwandensis: LH22_01400
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Entry
LH22_01400 CDS
T03331
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
kln
Pantoea rwandensis
Pathway
kln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LH22_01400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kln03019
]
LH22_01400
03400 DNA repair and recombination proteins [BR:
kln03400
]
LH22_01400
Enzymes [BR:
kln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LH22_01400
Messenger RNA biogenesis [BR:
kln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LH22_01400
DNA repair and recombination proteins [BR:
kln03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LH22_01400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AIR84180
LinkDB
All DBs
Position
complement(314058..315881)
Genome browser
AA seq
607 aa
AA seq
DB search
MATSAVLNQEMLAQQVLQDTFGYQQFRPGQQTIIETALAGRDCLVVMPTGGGKSLCYQIP
ALVREGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQQQVFADCRTGKLKLLY
IAPERLMMDNFLDSLHQWNPVMLAVDEAHCISQWGHDFRPEYGSIGQLRQRFPDLPVMAL
TATADETTRNDIAHLLQMDDPLIQISSFDRPNIRYTLVEKFKPTDQLLRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSRGLSVGAYHAGIDSAQRAHVQEAFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMAWLRKCLEEKAPGPL
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQQQCGNCDICLDPPRRYDGLVEAQKAL
SSIYRTGQRFGMGYIVDVLRGSTNHRIRDNGHDKLPVYGIGREQSQEHWVSVLRQLIHLG
MVTQNIAMHSALQLTEAARPVLRAEVPLMLAVPRIVTVKSRSSSPKVHSGNYDRTLFGKL
RKLRKAIADESNIPPYVVFNDATLIEMAEQMPITASEMLSVNGVGHRKLERFGKPFLVMI
KEHVDEE
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
gtggcaacatcggcagtgcttaatcaggaaatgctggcgcagcaggtattacaagatacc
ttcggctaccagcaatttcgccccggtcagcaaaccatcatcgaaaccgcgctcgcaggg
cgtgattgtctggtggtgatgccgaccggtggcggcaaatcgctgtgctatcaaatcccg
gcgctggtgcgcgaggggctgacgctggtggtttcaccgctgatatcactgatgaaggat
caggtcgatcaattgctggccaacggcgtggcagcggcgtgcctcaactcgacgcagacg
cgtgagcagcagcaacaggtctttgcggattgtcgcaccggtaagctgaagctgctgtat
atcgcgcctgaacgtctgatgatggataacttcctcgacagcctgcaccagtggaatccg
gtgatgctggcggtggatgaggcgcactgtatctcgcaatggggccatgatttccgcccg
gagtatggctcgattggtcaactgcgtcagcgtttcccggatctgccggtgatggcgctg
acggcaaccgctgacgaaaccacgcgtaatgacatcgctcatctgttgcagatggacgat
ccgctgattcaaatcagcagctttgaccgcccgaatattcgctacacgctggtggaaaaa
tttaaaccgaccgaccagctgttgcgctatgtacaggagcagcggggtaaaagtggcatt
atttactgtaacagccgtgccaaagtggaagacacggccgcgcgtctgcaaagccgtggg
cttagtgtcggcgcgtatcacgccggtatcgacagcgcccagcgcgcgcacgtgcaggaa
gccttccagcgtgatgacctgcaaattgtggttgccaccgtggcatttggtatgggcatc
aacaagcctaatgtgcgcttcgtggtgcactttgatattccgcgcaatatcgaatcctac
tatcaggaaaccggtcgcgccgggcgtgatggcctgcccgccgaagcgatgatgctttac
gatccagcggatatggcgtggttacgtaaatgtctggaagagaaagcgcccggcccgtta
caagatattgagcgtcacaagctcaatgcgatgggcgcgtttgccgaagcgcaaacctgc
cgtcgtttagtgctgctcaactactttggtgaagggcgtcagcagcagtgcggcaactgc
gatatctgccttgatcctccacgtcgatatgatggtttagtggaagcgcagaaggcgctt
tccagcatttatcgtaccggccagcgctttggtatgggctatattgtcgacgtgctgcgc
ggttccaccaaccatcgcattcgcgataacgggcacgataaattgccggtgtacggcatc
ggccgtgagcagagtcaggagcattgggtcagcgtgctgcgtcagctgatccatcttggt
atggtgacgcaaaatattgccatgcactccgctttacagctcacggaagcggcgcgtccg
gtattgcgtgccgaagtgccattgatgctggcggtaccgcgcatcgtcacggtgaagagc
cgcagcagctcgccaaaagtgcacagtggcaattacgatcgcaccttgtttggcaagctg
cgcaaattgcgtaaggcgattgccgacgaatctaacattccgccatacgtggtgtttaac
gatgccacattaattgagatggcggagcaaatgccgattaccgcgtcagaaatgttgagc
gtgaacggtgtcggtcatcgcaagctggaacgttttggtaaaccgttcctggtgatgatc
aaagagcatgtcgatgaagagtaa
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