Pantoea rwandensis: LH22_11890
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Entry
LH22_11890 CDS
T03331
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
kln
Pantoea rwandensis
Brite
KEGG Orthology (KO) [BR:
kln00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kln03032
]
LH22_11890
03400 DNA repair and recombination proteins [BR:
kln03400
]
LH22_11890
Enzymes [BR:
kln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LH22_11890
DNA replication proteins [BR:
kln03032
]
Prokaryotic type
DNA Topoisomerases
LH22_11890
DNA repair and recombination proteins [BR:
kln03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LH22_11890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
DUF2399
DUF7784
Motif
Other DBs
NCBI-ProteinID:
AIR86125
LinkDB
All DBs
Position
2527245..2529842
Genome browser
AA seq
865 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSTARKTTDGEKAKTGKKVK
KDEKAALVSRMGVDPWHGWEADYQILPGKEKVVAELKSLAADADHIYLATDLDREGEAIA
WHLREVIGGDDKRFSRVVFNEITKNAIRQAFEKPGELNIERVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVEREHEIKAFVPEEYWEIDADFSTPKGDALGMQVTH
QGDKAFRPVNREQTYAAVSVLENARYEVLDREDKPTSSKPSAPFITSTLQQAASTRLGFG
VKKTMMMAQRLYEAGHITYMRTDSTNLSQDAVAMARGFVEKSFGKKYLPESPITYASKEN
SQEAHEAIRPSDVNIQAEQLKDMEADAQKLYQLIWRQFVACQMVPAQYDSTTLTVGAADF
KLRAKGRTLRFDGWTKVMPALRKNDEDLTLPPVNVGDMLDLKELMPSQHFTKPPARFSEA
SLVRELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEQNFRELMNY
DFTARMEDSLDQVANNEAQWKAVLDSFFSDFSQQLGQAEKEPEEGGMQPNQMVLTSIDCP
TCSRQMGIRTASTGVFLGCSGYALPPKERCKQTINLIPENEVLNVLEGDDAETNALRARR
RCQKCGTAMDSYLIDNQRKLHVCGNNPECDGYEIEQGEFRIKGYDGPIVECEKCGSEMHL
KMGRFGKYMACTNDECKNTRKILRNGEVAPPKEDPVPLPELACEKSDAYFVLRDGAAGVF
LAANTFPKSRETRAPLVEELQRFADRLPEKLKYLAEAPAADPEGNKTLVRFSRKTKQQYV
SSEKEGKATGWSMFYIDGKWQEAKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagcactcgtaatcgttgagtccccggcaaaggccaaaacaatcaataaatac
ctcggtaatgactacgtggtgaaatccagcgtcggtcatatccgtgatttgccgaccagc
ggttcaactgcccgtaaaactaccgacggggaaaaggcgaaaacaggaaaaaaggttaag
aaggatgagaaggccgcattggtcagtcgcatgggtgtcgatccctggcatggctgggaa
gcggactatcagattctgccgggtaaagaaaaagtcgtagccgaactgaaaagcctcgcc
gccgatgctgaccacatctacctcgcaacggaccttgaccgcgaaggggaggccattgcc
tggcacctgcgggaagtgatcggtggcgatgacaagcggtttagccgcgtggtgttcaac
gaaatcaccaaaaatgcgattcgccaggcgtttgaaaaaccgggcgaactgaatattgag
cgtgttaatgcacagcaggcgcgtcgctttatggaccgcgtggtgggctacatggtttcc
ccgctgctgtggaagaaaattgcccgtggtttgtctgcgggtcgtgtacagtctgtggct
gtgcgactggtggttgagcgcgagcacgaaattaaagcgttcgtgccggaagagtattgg
gagatcgatgcggatttctctacgccgaaaggcgacgcgctggggatgcaagtcacgcat
cagggcgacaaagcgttccgtccggttaatcgcgagcaaacttatgctgcggtatccgtg
ctggaaaacgcgcgttacgaagtgctggatcgtgaagacaaaccgaccagcagtaaaccg
tctgcgccttttattacctcgacattgcaacaagcggcgagtacacgtctcggttttggc
gtgaagaaaaccatgatgatggcgcaacgtctctacgaagcgggtcacatcacctatatg
cgtactgactccaccaacctgagtcaggatgcggtggcgatggcgcgcggctttgtcgag
aagagttttggtaaaaagtatctgccagaatcaccgatcacctacgccagtaaagagaat
tcgcaggaagcacacgaagcgatccgtccttcggatgtcaatattcaggcagaacagctg
aaagatatggaagctgatgcgcagaaactgtaccagctgatctggcgtcagtttgtggcc
tgccagatggtgcctgcgcagtatgactccaccaccctgacggtgggtgcagcagacttt
aaactgagagcgaaaggccgcaccttgcgtttcgatggctggacaaaagtgatgccagcc
ctgcgtaaaaacgatgaagacttgacgctgccaccggtcaatgtcggcgatatgcttgac
ctgaaggagctgatgccaagccagcacttcaccaagccgccagcccgcttcagcgaagct
tccttagtccgtgagttggaaaaacggggtatcggccgtccatcgacctatgcctcaatt
atttccaccattcaggatcgcggttacgtgcgggtagaaaaccgccgcttctatgctgaa
aagatgggtgaaatcgtcaccgatcgtctggaacagaatttccgtgagctgatgaactat
gacttcaccgcgcgcatggaagacagccttgaccaggtcgccaataacgaagcgcagtgg
aaagcggtgctggattccttcttcagcgatttcagccagcagttaggtcaggccgagaaa
gagccagaagagggcggcatgcagccgaaccagatggtgctgacctcgatcgactgcccg
acctgtagccgccaaatgggtatccgtaccgccagtaccggtgtgttcctcggctgctcc
ggttatgcgctgccacccaaagaacgctgcaaacagaccatcaatctgattccggaaaac
gaagttcttaacgtactggaaggcgatgatgctgaaaccaatgcgttacgtgcccgtcgt
cgttgccagaagtgtggcaccgcgatggatagctacctgatcgacaatcagcgtaagctg
cacgtctgtggtaacaacccggaatgtgacggctacgaaatcgaacagggcgaattccgc
atcaaaggttatgacggcccgatcgtagagtgtgaaaagtgtggttctgaaatgcacctg
aaaatggggcgcttcggtaaatacatggcctgcaccaacgacgagtgtaaaaacactcgc
aagattctgcgcaatggtgaagttgcaccaccgaaggaagatccggtgccgttgcctgag
ctggcgtgtgaaaagtcagatgcctactttgtattgcgtgacggtgcggcaggggtattc
ctggcggccaacaccttcccgaaatcgcgtgaaacgcgtgcgccgctggtggaagagctg
caacgttttgctgaccgtctgcctgagaagctgaaatacctggcggaagcgccagcagcg
gatccggaaggcaataaaacgttagtgcgttttagccgtaaaactaagcagcagtatgtt
tcctccgagaaggagggcaaagcgactggctggtcgatgttctatatcgacggtaagtgg
caggaagcgaagaagtaa
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