Pantoea rwandensis: LH22_11980
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Entry
LH22_11980 CDS
T03331
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
kln
Pantoea rwandensis
Brite
KEGG Orthology (KO) [BR:
kln00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
kln03016
]
LH22_11980
Enzymes [BR:
kln01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LH22_11980
Transfer RNA biogenesis [BR:
kln03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LH22_11980
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
ODP
Motif
Other DBs
NCBI-ProteinID:
AIR86142
LinkDB
All DBs
Position
complement(2547663..2549597)
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKEKLHAQTPRAEGVVKGTEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI
SAVIHTDKDRESAEPETLIEPFLTRFVGRVQKKDDRLSIVPDHPLLKEAIQCRAARDVTH
DFQNGDWAVAEMRRHPLKGDRGFYAELTEFIVTADDHLAPWWVTLSRHNLEREAPKVGFG
EMLDEHLQREDLTALNFVTIDSASTEDMDDALYVEEQADGSLQLTIAIADPTAYVAEGSE
LDKLASKRAFTNYLPGFNIPMLPRELSDDICSLRPNVRRPALACRVSLTPDGSVAGEVQF
FAAWIESKSKLVYDEVSDWLENAGSWQPENEAIAGQIRLLHRVCLARSEWRQTHALVFKD
RPDYRFVLGDKGEVLDIISEPRRIANRIVEESMILANVCAAKVLQEKLGFGIYNLHTGFD
LANAEQAAGVLAGHGITVDPQAITTLEGFRQLRRELDAQPTQYLDSRIRRFQSFAEVGTE
PGPHFGLGLEAYATWTSPIRKFGDMINHRLLKAIVRGDSIARPKDEFTTIMSERRRLNRM
AERDVGDWLYARFLAPSAGTDRKFSAEIIDVSRGGMRVRLLENGAVAFIPAPFIHAVRDE
LVCSQESGTVQIKGEVVYRVTDIIDVTIAEVRMETRSVVARPAA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgttccaggataacccgctgctcgcgcagctgaaagagaagcttcacgcgcaaaccccg
cgcgccgaaggtgttgtgaaaggcacggaaaaaggctttggcttccttgaagtcgatgct
caaaaaagctacttcattccccctccgcagatgaaaaaagtgatgcacggtgaccgtatt
tctgcggtgatccacactgataaagatcgcgagagcgccgagccggaaaccctgattgag
ccgttcctgacccgctttgttggccgcgtgcagaagaaggacgatcgtttgtcgattgtg
cctgaccatccgctgctgaaagaggcgattcagtgccgcgctgcccgtgacgtgacccat
gattttcagaatggcgactgggccgtggctgaaatgcgccgccatccgctgaaaggcgat
cgcggattctatgctgaactgaccgaattcattgtcacagccgacgatcatcttgcgccg
tggtgggtcaccctgtcgcgccataatctggagcgcgaagccccgaaagtgggcttcggc
gaaatgctggatgagcacttgcagcgcgaagaccttaccgcgctcaacttcgtcaccatc
gacagcgccagcaccgaagatatggatgatgcgctgtatgttgaagagcaggctgacggc
agtctgcagctgaccatcgctattgccgatccgaccgcttacgtggcagaaggcagcgag
ctggataaactggcttctaaacgcgccttcactaactatttacctggcttcaacatcccg
atgctgccgcgcgaactgtctgatgacatctgttcactgcgtccaaacgtacgtcgtcca
gcgttggcctgccgcgtttcgctcacgccagatggcagtgtagcgggcgaagtgcagttc
ttcgcggcctggatcgaatccaaatccaagctggtttacgacgaagtgtccgactggctg
gaaaacgccgggagctggcagccagagaatgaggcaattgccggacagattcgcttgttg
catcgtgtctgcctggcgcgcagcgagtggcgtcaaactcatgcgctggtgtttaaagat
cgccctgattaccgctttgtgctgggtgacaaaggcgaagtgctggatatcatttctgag
ccacgtcgcatcgccaaccgcatcgttgaagaatccatgattctggctaacgtctgcgcg
gccaaagtgctgcaggagaagctgggctttggtatctataacctgcacaccggtttcgat
ctggccaatgcggagcaagccgctggcgtgcttgccggtcacggtatcaccgttgatcca
caggcgatcaccacgctggaaggtttccgccagctgcgtcgtgagctggatgcccagcca
actcagtacctcgacagccgtattcgtcgcttccagagcttcgctgaagtcggcaccgaa
ccgggtccgcactttggtctgggtctcgaagcctatgcgacctggacatcgccgattcgt
aaattcggcgatatgatcaaccatcgcctgttgaaagccattgtgcgcggcgacagcatt
gcgcgtccaaaagacgagttcaccaccattatgagtgaacgccgtcgtctgaaccgcatg
gccgaacgtgatgttggtgactggctgtatgcgcgcttcctcgcgccatctgccgggacc
gatcgcaaattcagcgccgagatcatcgatgtgtctcgtggcggtatgcgcgtgcgtctg
ctggagaacggcgccgttgcctttatccctgccccgttcatccacgcggtgcgtgatgag
ctggtgtgctcacaagagagcggcaccgtgcagattaaaggcgaagtcgtttatcgtgtg
accgacattatcgacgtgaccattgccgaagtgcgtatggaaacccgtagcgttgtggca
cgccctgctgcctga
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