Pantoea rwandensis: LH22_14810
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Entry
LH22_14810 CDS
T03331
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
kln
Pantoea rwandensis
Pathway
kln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LH22_14810 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kln03019
]
LH22_14810 (rne)
03009 Ribosome biogenesis [BR:
kln03009
]
LH22_14810 (rne)
Enzymes [BR:
kln01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LH22_14810 (rne)
Messenger RNA biogenesis [BR:
kln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LH22_14810 (rne)
Ribosome biogenesis [BR:
kln03009
]
Prokaryotic type
rRNA processing factors
LH22_14810 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AIR86669
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All DBs
Position
3150380..3153838
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AA seq
1152 aa
AA seq
DB search
MRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLKEI
SREYFPANYNAHGRPNIKEVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNN
PRAGGISRRIEGDDRTELKEALSALELPDGMGLIVRTAGVGKSAESLQWDLSFRLKHWEA
IKKAADSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFS
SKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGG
DIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRAR
IQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEEALK
DNTKEVHAIVPVPVASYLLNEKRDAVSAIEKRQGGVRAIIVPNDQMETPHYSVLRVRKGE
ETQTLSYHLPKLHEAEMALPSEEEHAERRRPEQPALAAFVMPDAPPAPVEVEKESHSAVK
ADAKPAAAAAAPAVASTGFVARLLGGLKKLFAGDAPAAAPVEAKPEEKAAESENNQQRGD
RRNNRRSNNRRDRTPRNGENAQGREGREPREAREPRESREPREAREPRDNQDNRRNKRQN
EPRGERPALTDEQLQQRDEQQQQRREQRAERQRRRQDEKRNQQQDQKVAETVAQTDIADE
NVAQEEERVQVMPRRKQRQLTQRVRVGDTGEVAAAIPAPAVTEAVVENAQRATFNEQPEV
AQDEQDDNENRDSANMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSAMPLESAASSPEMA
SGKVWITYPVAQAHDQFSSQEALNEMPDYSYQHTGEADALPVAAAAEQVAQPAAQEAVHQ
SEPQAHTEVPVVNTDDLTPVAAPVNEEPAVISAAVEQIAQQTAAEAVPADEVTTAPAETA
LTNQVEDVQADVAPAADVVAASSEVAPAAEVASASTETVSATEVTPAEAVPAAETAAPQA
SEAVVAAAQAPAEVEPAVAAAEQAPSEVEPAVAAQVEEVLAAPVAAEAPAAPVTEPHAPV
AARDTAVSNAETRWKHHATAPMTKAPAPAWEPEVVRHSDWVRPPFDFEGRGSAGGHSATH
QATAPATRPESV
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
ttgcgcgttgcccttgttgacggccaacgtctgtacgatctggatatcgaaagccccgga
cacgagcagaaaaaagccaatatctacaaaggtaaaatcacccgtgttgaacccagcctt
gaagcggcatttgtcgattacggtgctgaacgccacggtttcctccctctgaaagaaatt
tcccgcgaatacttccctgctaattacaacgcacacggccgtccaaacatcaaagaggtg
ttgcgagaaggtcaggaagttatcgtgcaaatcgataaagaggagcgtggaaataaaggt
gcggccttaaccaccttcatttctctggccggtagctatttagtcctgatgccgaataac
ccgcgtgccggggggatttcccgccgtatcgaaggtgacgatcgcaccgaactgaaagaa
gcgctgtccgcactggaactgccagacggcatgggcttgatcgtgcgtaccgcaggcgtt
ggcaaatctgccgaatcgctgcagtgggacctgagtttccgactgaagcactgggaagcg
atcaaaaaagccgctgatagccgccctgccccgttcctgatccaccaggaaagcaacgtc
atcgtgcgtgccttccgcgactatctgcgtcaggatattggtgagattctcattgataac
ccgaaagtgctggagctggcgcgtcagcatattgctgcgctcggtcgcccggacttcagc
agcaaaattaaactgtacaccggtgaaatcccgctgttcagccactaccaaattgagtcg
cagattgaatctgcattccagcgtgaagtgcgcttgccttccggtggctcgattgttatc
gacagcaccgaagcactgaccgccatcgatatcaactccgcccgtgcaacacgcggtggc
gacatcgaagagacggccttcaatactaacctcgaagcggctgatgaaatcgctcgtcag
ttgcgcctgcgcgacctcggcggcctgatcgtcatcgacttcatcgatatgacaccggtt
cgacaccagcgcgcggttgaaaaccgtctgcgtgaagcggttcgtcaggatcgtgcgcgc
attcaaatcagtcacatttcacgtttcggtctgctggaaatgtcgcgtcagcgtcttagc
ccatcattgggtgaatccagccatcacgtctgcccacgttgtagcggcaccggcaccatc
cgtgataacgaatcgctctcgctgtctatcttgcgtctgattgaagaagaagcgctgaaa
gacaacaccaaagaagtgcatgcgattgtacctgtgcccgtcgcctcgtatctgctgaac
gaaaaacgtgatgcagtcagtgcgatcgagaaacgccagggtggtgtgcgtgccatcatc
gtgccaaacgatcagatggaaacgccacattactctgtgctgcgcgtgcgcaaaggcgaa
gagacgcagacactttcttaccacctgccgaaattgcatgaagctgagatggcactgcct
tcggaagaagagcatgccgaacgtcgtcgccctgagcagccagccctggccgcctttgtg
atgcctgatgcgccgcctgcgccggttgaagtggagaaagagagccactctgcggttaaa
gcggatgcaaaaccggcagctgccgctgcggcgcctgccgttgccagcactggctttgtc
gctcgcctgttgggcggtttgaaaaaactgtttgctggcgatgcacctgctgctgcacct
gttgaagctaaaccggaagagaaagccgctgaaagtgagaacaatcagcagcgtggtgac
cgccgtaacaaccgtcgtagcaataatcgtcgcgatcgcactccgcgcaacggtgaaaat
gctcagggtcgcgaaggccgtgaaccgcgcgaagctcgtgagccacgcgaatcgcgtgaa
ccacgtgaagcccgtgagccgcgtgacaatcaggacaatcgccgtaataagcgtcagaac
gagcctcgtggcgaacgtccagcgttgaccgatgagcagctgcagcagcgtgatgagcag
cagcaacagcgtcgtgagcagcgtgctgaacgccagcgtcgtcgtcaggatgagaaacgt
aatcagcagcaagatcagaaagtcgctgaaaccgttgctcagaccgatatcgctgatgaa
aacgttgcgcaggaagaagaacgtgtgcaggtcatgccacgtcgtaaacagcgtcaactg
acccagcgcgtgcgcgtgggtgataccggcgaagtggcggcagccatcccggcacccgca
gtcactgaagcggttgtagaaaatgcacagcgcgctacattcaatgagcaacctgaagtc
gctcaggatgaacaggatgataacgagaaccgtgatagcgccaacatgccgcgtcgctcg
cgtcgttcaccacgtcatctgcgcgtgagcggccaacgtcgtcgtcgctatcgtgatgag
cgttacccaacgcaatctgccatgccgctggaatcggctgcgtcttctccagagatggca
tccggtaaagtctggattacctacccggttgcccaggcccacgatcagttctcctctcag
gaagcgctgaacgaaatgccagattacagctatcaacataccggtgaagcggacgcactg
ccggttgcggcagcagcagaacaggttgcacagccagcagcgcaagaggctgttcatcag
tctgagccacaggcacatacagaagtgcctgtggtgaacaccgatgacctgaccccagtc
gctgcgcctgtcaacgaagagcctgccgtgatttctgccgctgttgagcagattgcacaa
caaaccgctgctgaagccgtaccggccgatgaagtgacaacggcaccggctgaaactgcc
ctcactaatcaagtcgaagatgttcaggctgacgtcgcaccggctgcggatgttgttgct
gcatcgtctgaagtggcaccggctgctgaagtggcgtctgcatcgactgaaacggtttct
gctactgaagtgacaccggctgaagcggttcctgctgcggagactgccgcaccacaggca
agcgaagcagtagtagcagcagcgcaagcgcctgctgaagttgagcctgctgttgcagcg
gctgagcaagcgccttctgaagttgagcctgctgttgccgcgcaagtggaagaagtactg
gctgcaccagtcgctgctgaagcgcctgctgcaccggtgactgaaccgcatgcgcctgtt
gctgcacgtgataccgcagtgagcaacgctgaaacccgctggaagcatcacgccacggcg
ccgatgaccaaagcacctgctccggcatgggagccagaagtcgttcgtcacagcgattgg
gttcgcccaccgtttgacttcgaaggccgtggttctgcgggcggccatagcgccacgcat
caggcgacggcaccggcaacacgtccggaaagcgtttaa
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