Pantoea rwandensis: LH22_16300
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Entry
LH22_16300 CDS
T03331
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
kln
Pantoea rwandensis
Pathway
kln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LH22_16300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kln03019
]
LH22_16300
Enzymes [BR:
kln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LH22_16300
Messenger RNA biogenesis [BR:
kln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LH22_16300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
AAA_22
Cullin_binding
Motif
Other DBs
NCBI-ProteinID:
AIR86951
UniProt:
A0ABM5RLU2
LinkDB
All DBs
Position
complement(3473808..3475214)
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AA seq
468 aa
AA seq
DB search
MSFDSLGLSADILRAVAEQGYQEPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLL
QRLTANPSNARGRRPVRALILTPTRELAAQVGENVREYSQYLNIRSLVVFGGVSINPQMM
KLRGGVDVLVATPGRLLDLAHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLARLPAK
RQNLLFSATFSDEIKTLAEKLLTNPEQVEVARRNTASEQVSQQVHFVDKKRKRELLSLMI
GRDNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKSGGIRVLV
ATDIAARGLDIEELPHVVNYELPNVAEDYVHRIGRTGRAAATGAALSLVCVDEHKLLRDI
ERLLKREIPRIELEGFEVDPSIKAEPIQNGRQQQGRGQGRGQGGQGRGQGGNVSRPHSGN
GQRPQGGNGARPQGEARPARRQGSSAGQNTPAANSGRRRPAAKKSGNI
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgactctctcggcttaagtgccgatattttgcgtgcggtagcggaacaaggc
taccaggaaccgacgccgattcagcgtcaggccattcccgtagtgctggcgggccgtgac
ctgctggcgagcgcccaaaccggtaccggtaaaaccgccggtttcacgctgccactgttg
cagcgtctcactgcgaatccttctaacgcgcgcggccgtcgtccggtacgtgcgttgatc
ctcaccccaacccgtgaactggcggcgcaggtgggcgagaacgtccgtgagtacagtcag
tatctcaatatccgttcactggtggtcttcggtggcgtgagcatcaacccgcagatgatg
aaactgcgcgggggtgtggatgtgctggtggcgacccctggccgtctgctggatctggcg
catcaaaatgcggttgatctgtcacaggtcgaaattctggtactggatgaagcggatcgc
atgctcgatatgggctttatccacgacatccgccgtgtgctggcgcgtctgccggcgaaa
cgtcagaacctgctgttttctgccaccttctcggatgagatcaaaaccctggcggaaaaa
ctgctcactaacccggaacaggttgaagtggcgcgtcgtaacaccgcctcggaacaggtt
tcacagcaagtacacttcgttgataagaaacgtaagcgggaactgctgtcgctgatgatt
ggtcgcgataactggcagcaagtgctggtgttcacccgtaccaaacacggcgctaaccat
ctggctgaacagctgaacaaagatggcatcaccgcagcggcgatccacggcaataaaagc
cagggcgcgcgtacccgtgcgttagctgactttaaatccggtggcattcgtgtgctggtg
gcgacggatatcgctgcgcgtggtctggatatcgaagaactgccacacgtcgtgaactac
gagctgccaaacgtggcggaagattatgtgcatcgtattggtcgtaccggtcgtgctgcg
gcaaccggcgccgcgctgtcactggtgtgtgtcgatgaacacaaactgctgcgtgacatt
gagcgtttgctgaagcgtgagatcccgcgcattgagctggaaggttttgaagtagacccg
agcattaaagcggaaccgattcagaatggtcgccagcagcagggtcgcggccagggccgt
ggtcagggtggtcagggtcgtggacaaggcggtaatgtctctcgcccgcacagtggcaac
ggtcagcgtccacagggtggcaatggcgcacgtccacaaggcgaagcgcgcccggcacgt
cgccagggcagcagtgccggtcaaaatacgccagccgccaacagcggtcgtcgtcgtccg
gcagcgaaaaagagcgggaacatctaa
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