Pantoea rwandensis: LH22_18420
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Entry
LH22_18420 CDS
T03331
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
kln
Pantoea rwandensis
Pathway
kln03030
DNA replication
kln03430
Mismatch repair
kln03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
kln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LH22_18420 (dnaE)
03430 Mismatch repair
LH22_18420 (dnaE)
03440 Homologous recombination
LH22_18420 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kln03032
]
LH22_18420 (dnaE)
03400 DNA repair and recombination proteins [BR:
kln03400
]
LH22_18420 (dnaE)
Enzymes [BR:
kln01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LH22_18420 (dnaE)
DNA replication proteins [BR:
kln03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LH22_18420 (dnaE)
DNA repair and recombination proteins [BR:
kln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LH22_18420 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AIR87332
LinkDB
All DBs
Position
complement(3883660..3887142)
Genome browser
AA seq
1160 aa
AA seq
DB search
MAEPRFIHLRVHSDYSMVDGLAKTKPLVKKAAALGMPAIAITDYINLCGLVRFYGSAHDA
GIKPIIGADFHVASELMGDELTQLTVLAANNTGYQNLTLLISRAYQRGYGIAGPIIDRDW
LVELGEGIILLSGGRKGDVGRSLLRGNSALVSQCLSFYQEHFPNRYYLELTRTGRADEEA
YLHAAVELAIAEGVPVVATNEVCFLNEEDFDAHEIRVAIHDGFTLDDPKRPRHYSPQQYM
RSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGEMTTEDFLVMKSREGL
EERLEFLFPDDKLRAEKRPEYDERLEIELNVINQMGFPGYFLIVMEFIQWSKDNGIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAE
MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLEKAFEAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDENGQFPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRRAKEGLEPIDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDIQWQHETLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRSVFQDGAESMGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYPFHVNDEGEIVYGIGAIKG
VGEGPIEAIIEARNEGGYFKELFDLCARTDTKKINRRVMEKLIMSGAFDRLGPHRAALMS
ALSDALKAADQHAKAEATGQADMFGVLAEEPEQVEKSYTNITPWPEQIQLDGERETLGLY
LTGHPINQYLKEIDRYVGGMRLKDMHPTDRGKVTIAAGLVIAARVMVTKRGNRIGICTLD
DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARAKLRFGAAWRISPSD
RLLNDLRSLVGSEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggctgaacctcgttttatacatctgcgcgtacacagcgactattcgatggtcgatggc
ctggcgaaaactaagccattggtcaagaaggcggctgcgcttggtatgccggcgattgcg
attaccgattacatcaatctttgcgggttggtgcgtttttacggcagtgcgcacgatgca
ggcatcaaaccgattattggtgcggatttccatgtcgccagcgaattgatgggcgatgag
ctgacacagctcacggtacttgccgccaacaacacgggctatcagaacctgacgttgttg
atttcgcgagcgtatcagcgtgggtatggtattgccgggccaattattgaccgtgactgg
ctggtcgagctgggtgaaggcatcattctgctctccggtgggcgcaagggtgatgttggc
cgcagtctactgcgcggcaacagtgcgctggtatcgcagtgcctcagtttctatcaggaa
cacttccctaatcgttattacctcgaactgacgcggaccggacgcgctgatgaagaggct
tatctgcatgccgccgttgagttagcgattgccgaaggtgtgccggtggtggccaccaac
gaagtctgtttcctcaacgaagaagattttgacgcccatgaaattcgcgtggcgattcat
gatggcttcacgctggacgatccaaaacgcccacgtcattacagtcctcagcaatatatg
cgcagcgaagaggagatgtgcgagctgttctcggacatcccggaagcgctggaaaacagc
gtagagattgctaagcgttgtaacgtcacggtacgcctgggtgagtacttcctgccgcag
ttccccaccggtgaaatgacgaccgaagatttcctcgttatgaaatctcgtgaagggttg
gaagagcgtcttgaattcctgttcccggatgacaagctgcgtgcggaaaagcggccagaa
tatgacgaacgtcttgagattgaacttaacgttatcaaccagatgggattccctggctac
ttcctgatcgtgatggagtttatccagtggtcgaaggataacggtatcccggttggaccc
ggccgtggttcgggtgcgggttcattagtggcgtatgcgcttaagatcaccgatctcgat
ccactggaatttgacctgctgttcgaacgcttccttaacccggaacgtgtttcaatgcct
gacttcgacgtcgatttctgcatggagaagcgcgatcaggtgatcgatcacgttgccgag
atgtatgggcgcgaagcggtttcgcagatcatcaccttcggtacgatggcagcgaaagcg
gttatccgcgacgtaggacgcgtgctcggtcatccgtatggctttgtggatcgtatctcc
aagttgatcccgccagatcccgggatgacgctggaaaaagcctttgaagcggaaccgcag
ctgccggaaatctacgaggcagatgaagaggtcaaagcgctgatcgatatggcgcgcaag
ctggaaggtgtcacgcgtaacgccggtaaacacgccggtggggtggttatcgcaccgacc
aaaatcactgattttgcgccgctttactgtgacgagaatggccaattcccggtaacccag
tttgataagaatgatgtggaatatgccggcctggtgaagtttgacttcctcggcttgcgt
acgctgaccatcatcgactgggcgcttaagatgattaacccgcgccgcgccaaagaaggg
ttggagccgattgatatcgccgccatcccgctggatgacaagaaaagcttcgatatgctg
caacgctcggaaaccacagcggttttccagcttgaatcacgcggcatgaaagatctgatt
aagcgtctgaagccagactgctttgaagatatgatcgcactggtggcactgttccgtccg
ggaccgctgcaatcgggcatggttgataacttcattgaccgtaagcacggccgtgaagaa
atttcgtacccggatattcagtggcagcacgaaaccctgaagccggtactggaaccgacc
tacggcatcatcctgtatcaggaacaggtgatgcagattgctcaggtgctgtcgggttat
accctgggtggtgcggatatgctgcgccgtgcaatgggtaaaaagaaacccgaagagatg
gctaagcaacgttcggtgttccaggacggtgcagaaagcatgggcgtggacggtgaactc
tcgatgaagatcttcgatctggtagagaagtttgcgggttatggctttaacaagtcgcac
tcggcagcctatgctttggtttcttatcagacgctgtggctgaaagcgcactacccagca
gaatttatggccgcggtaatgaccgccgatatggacaacaccgagaaggtcgttggcctg
gtggatgagtgctggcgcatgggcctgaaagtgctgccgcccgatatcaactccggtctg
tatcctttccacgtgaacgatgaaggtgaaatcgtttacggcattggcgccattaaaggc
gtgggtgaagggccgatcgaagcgatcattgaagcgcgtaatgaaggcggctacttcaaa
gagctgttcgatctctgcgcgcgtaccgacaccaaaaagatcaaccgccgtgtgatggaa
aagctgatcatgtccggcgcatttgatcgcctcggtccgcatcgcgcagccttgatgagc
gcgctcagcgatgctttaaaagctgcggatcagcacgcaaaagcagaagccaccggacaa
gccgacatgtttggcgtgctggccgaagagcctgagcaggtggagaagtcatacaccaat
atcacgccatggccggaacagattcaactggacggtgagcgtgagacgctgggtttgtat
ctcaccggccacccaattaatcagtatcttaaagaaattgatcgctacgttggcggcatg
cgcctgaaggacatgcatccgacggatcgtggtaaagtaaccatcgcggcggggctggtg
attgccgctcgcgtgatggtcacgaaacgcggcaaccgaattggtatttgtactctcgac
gatcgctctggtcgtctggaagtgatgttatttaccgatgcgttagataaataccagcag
ttgctggagaaagaccgtatcctgatcgtcagtggacaggtcagctttgatgactttagc
ggtggccttaaaatgaccgctcgagaagtgatggacatcgacgaagcgcgggaaaaatac
gcgcgcggacttgctatctcgctgacggacaggcaaattgatgaccagcttttaaaccgt
ctccgccagtctctggagcctcatcgctccgggaccattccggtgcatctctattatcag
agagcagatgcgcgggcgaagctgcgctttggtgcagcgtggcgtatttcgcccagcgat
cgtttactcaacgatttgcggtcgttagtaggatcggagcaggtggaactggagtttgac
taa
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