Pantoea rwandensis: LH22_19680
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Entry
LH22_19680 CDS
T03331
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
kln
Pantoea rwandensis
Pathway
kln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LH22_19680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kln03019
]
LH22_19680
03009 Ribosome biogenesis [BR:
kln03009
]
LH22_19680
Enzymes [BR:
kln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LH22_19680
Messenger RNA biogenesis [BR:
kln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LH22_19680
Ribosome biogenesis [BR:
kln03009
]
Prokaryotic type
rRNA helicases
LH22_19680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AIR87577
LinkDB
All DBs
Position
complement(4171966..4173870)
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AA seq
634 aa
AA seq
DB search
MTDIQTTFSDLGLNADILESLNGMGYEKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAF
SLPLLNNIDPTVRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDG
HQTALFSATMPEAIRRITKRFMKDPQEVRIQSSLTTRPDISQSYWTAYGRKTDALVRFLE
AEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA
TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE
RTMKLTIPEVELPNAELLSERRLAKFAAKVQLQLESSDLDMYRALLSKMQPGEDLDLETL
AAALLKMAQGERPLILPPEAPRPPRREFRDRDDRRDSRDSRGPRESRGDRGDRDGAPRRE
RRDVGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPG
EVLQHFTRTRILNKPMNMQLMGDAPAFERSERRPGGRDGERRGNGAPRGEGAPRRFSERR
EGGRDSGREGGRFSREGGRGPRPEGASAPRRRDA
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgactgatattcaaaccactttttctgaccttggcctgaacgctgacatcctcgaatca
ctgaacggtatgggctacgaaaagccatccccaatccaggctgagtgtattcctcacctg
ctggcgggccgtgatgtgctgggtatggcgcagaccgggagtggtaaaacagcggcattc
tccctgccgttactgaacaacattgatccaactgtccgcgcaccacagattctggtgctg
gctccaacccgcgaactggctgttcaggttgctgaagccatgacggaattctctaaacac
atgcgtggcgtgaacgtggttgccctgtacggcggccagcgttatgacgttcagctgcgc
gcactgcgccaggggccacaggttgtcgtaggtacgcctggtcgtctgctggaccacctg
aaacgcggcacgttagatctgtctaacctgcgcggtctggtgctggacgaagctgatgaa
atgctgcgtatgggcttcatcgaagacgttgaaaccatcatggcgcagatcccagacggt
caccagaccgcgctgttctcagcaaccatgccagaagcgattcgtcgtatcaccaaacgc
ttcatgaaagatccacaggaagtgcgcattcagtcaagcctgaccacgcgtcctgacatt
tctcagtcttactggaccgcttacggccgtaaaactgacgcgctggtgcgtttcctggaa
gcggaagacttcgatgctgccatcatcttcgtgcgtaccaaaaacgccacgctggaagtg
gctgaagcgctggagcgcagcggctataacagcgcagcactgaacggtgacatgaaccag
gctctgcgtgagcagacactggagcgcctgaaagatggccgtctggacatcctgatcgca
accgacgttgccgcacgtggtctggacgttgagcgtatcagcctggttgttaactatgac
atcccaatggatgctgagtcttacgttcaccgtatcggccgtactggtcgtgcaggtcgt
gcgggccgtgcgctgctattcgttgagaaccgcgagcgtcgtctgctgcgtaacatcgaa
cgcaccatgaagctgactattccagaagttgaactgccaaatgcagaactgctgagcgag
cgccgtctggctaaattcgccgccaaagtacagctgcagctggaaagcagcgatctggat
atgtaccgtgcactgctgagcaaaatgcagccgggcgaagatctggatctcgaaacactg
gccgcagcactgctgaaaatggcacagggcgaacgtccactgattctgccaccagaagca
ccacgtccaccacgtcgtgagttccgcgaccgtgatgatcgtcgtgattctcgcgactca
cgtggtccacgcgaaagccgtggcgatcgcggtgaccgtgatggcgctccacgtcgtgaa
cgtcgtgacgttggcgaaatgcagctgtaccgcattgaagtgggccgtgatgatggtgtt
gaagttcgtcatatcgtgggcgcgatcgctaacgaaggtgacatcagcagccgttacatc
ggtaacatcaagctgtttggtacccactcaactatcgagctgccaaaaggtatgccgggc
gaagttctgcaacacttcactcgcacgcgcattctgaacaagccgatgaacatgcagttg
atgggtgatgctcctgcgttcgaacgtagtgaacgtcgtccaggcggtcgtgatggtgag
cgtcgtggtaatggcgcaccgcgtggcgaaggcgcaccgcgtcgcttctctgagcgtcgt
gaaggtggtcgtgactcaggccgtgaaggcggacgcttcagccgtgaaggcggtcgtggc
ccacgtccagaaggtgcttctgcaccacgtcgtcgtgacgcgtaa
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