Klebsiella sp. MPUS7: GUC22_16085
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Entry
GUC22_16085 CDS
T10508
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
klp Klebsiella sp. MPUS7
Pathway
klp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
klp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GUC22_16085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
klp03400
]
GUC22_16085
Enzymes [BR:
klp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GUC22_16085
DNA repair and recombination proteins [BR:
klp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GUC22_16085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
DUF488
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QHI88336
LinkDB
All DBs
Position
3437727..3441173
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEQYRYSLPVKAGDQRQLGELTGAACATLVAEMAERHGGPVVLIAPDMQNALRLNDEIR
QFTDSMVAGLADWETLPYDSFSPHQDIISSRLATLYQLPTMERGVLIIPVSTLMQRVCPH
NFLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPY
RLDFFDDEIDSLRLFDVDSQRTLEEVASINLLPAHEFPTDQAAIELFRSQWRDRFEVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFNEPLPPLFSYFPAKTLIVNTGDLEASAERFQNETR
ARFENRGVDPMRPLLPPEQLWLRSDELFSELKKWPRVQLKTERLAEKAANTNLGYQKLPE
LAIQAQNKAPLDNLRRFLESFSGPVIFSVESEGRREALGEMLARIKIAPKHILRLEEATA
NGRYLMIGSAEHGFIDSQRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG
QPVVHLEHGVGRYAGMTTLEAGGINGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKAGYAFKHDKEQYQLFCDGFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQVAEGKIDILIGTHKLLQPDVKL
RDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDALVVREAILREVLRGGQVYYLYNDVENIQKAAERLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRVASAKNENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLES
NEKGGTIEFNEKNNVNPVWLISLLQKQPQHYRLDGPTRLKFMQDLAERKTRMEWVRQFMR
QLEENATA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaataccgatactctctgccggttaaagccggcgatcagcgccagcttggc
gaacttaccggcgcggcctgcgccactctggtggcggaaatggccgagcgccacggcggc
ccggtggtactgattgcccccgatatgcaaaacgccctgcgtctgaacgatgaaatcagg
cagtttaccgatagcatggtggcgggcctcgcggactgggaaacgctcccctacgatagc
ttctccccgcaccaggacattatctcttcgcgtctcgctaccttataccagctcccgacg
atggaacgcggcgtattaatcattccggtcagcaccctgatgcagcgcgtctgtccgcat
aatttcctccacggccacgcgctggtgatgaaaaaaggccagcggctgtcgcgggatgcg
ctgcgcgcccagctggatagcgccggctatcgtcacgtcgaccaggtgatggagcacggc
gagtacgccacacgcggcgcattgcttgacctgttccctatgggcagcgagcagccctat
cgtctcgatttttttgatgatgagatagatagcctgcgtctgttcgacgtcgacagccag
cgtacgctggaggaagtcgccagcatcaacctgcttccggcgcacgaattcccgacggat
caggccgccatcgagctgttccgcagccagtggcgcgaccgctttgaggtcaaacgcgac
gccgagcatatttatcagcaggtcagtaaaggcacgctgcctgcggggatcgaatactgg
cagccgctgttctttaacgagccgctgccgccgctgttcagctatttcccggcgaaaacg
ctgatcgttaacaccggcgatctggaagccagcgccgaacgtttccagaacgaaacgcgc
gcccgctttgaaaaccgcggcgtcgatccgatgcgcccgcttttgccgccggagcagctg
tggctacgcagtgatgaactgtttagcgagctgaaaaaatggccgcgcgtacagctcaaa
accgagcgtctggcggaaaaagccgccaataccaacctcggctaccagaaactacccgag
ctggcgatccaggcgcagaacaaagcgccgctggataatctgcgtcgcttcctcgagtcc
ttcagcgggccggtgattttctcggtcgagagcgaggggcgtcgcgaggcgctcggcgaa
atgctggcgcgcattaaaatcgcgccaaagcatatcctgcgtcttgaagaggcgacggct
aacggccgctatctgatgattggctcggcagagcatggctttatcgatagccagcggaat
ctggcgctgatttgcgaaagcgatctgctgggcgagcgcgtcgcccgccgtcgtcaggat
tcacgccgcaccatcaatccggacaccttaatccgtaacctggcggagctgcatatcggc
caaccggtggtgcatcttgagcatggggttgggcgctacgccggcatgaccacgcttgag
gcgggcgggattaacggcgaatacctgatgctgacctacgcgaacgacgccaaactgtac
gtgccggtatcgtcgctgcatctgattagccgctacgccggcggcgcggaagagaatgcg
ccgctgcacaagctgggcggcgatgcgtgggcgcgagcgcggcaaaaagccgccgaaaag
gtgcgcgacgtggccgccgagctgctggatatctacgcccagcgcgcggcgaaagcgggc
tacgcatttaaacatgataaagagcagtatcagctgttctgcgacggcttcccgttcgaa
accacgcccgatcaggcgcaggccatcaacgccgtactgagcgatatgtgccagccgctg
gcgatggaccgcctggtgtgcggcgacgttggcttcggcaagacggaagtggcgatgcgc
gccgcgtttctggcggtggaaaaccataagcaggtggcggtgctggtgcctaccaccctc
ctcgcccagcagcacttcgataacttccgcgatcgcttcgccaactggccggtgcgaatt
gagatgctctcgcgctttcggagcgctaaagagcaggcgcagatccttgagcaggtcgcg
gaggggaaaatcgatattcttatcggcacccataagctgctgcagccggacgttaagctg
cgcgatctcggcctgctgattgtcgatgaagagcaccgctttggcgtacgccacaaagag
cgcattaaggcaatgcgcgccgacgtcgatatcctgaccctgaccgcgacgccgattccg
cgaacgctgaatatggcaatgagcggtatgcgcgacctctcgatcatcgccacgcccccc
gcacggcgtctggcagtcaaaaccttcgttcgcgaatatgacgcgctggtggtacgcgag
gcgatcctgcgtgaggtgctgcgcggcggccaggtctactatctctataatgacgtcgag
aatattcaaaaagcggcggaaagactcgcggagctggtgccggaagcgcgtatcgccatt
ggccacgggcagatgcgcgaacgcgaactcgaacgggtgatgaacgatttccaccaccag
cgttttaacgtgctggtatgtaccaccattatcgagaccgggatcgacattccgacggcg
aacaccattattatcgagcgcgccgatcacttcgggctggctcagctgcaccagctgcgc
ggccgcgtcgggcgttcgcatcatcaggcctacgcatggctgttgacgccgcatccaaaa
gcgatgaccaccgatgcgcaaaaacgccttgaggctatcgcgtcgctggaagatctcggc
gccggattcgcgctggccacccacgacctcgaaattcgcggcgcgggtgaactgctgggc
gaagatcagagcggctccatggaaaccatcggcttctctctctacatggagctgctggaa
aatgccgttgacgcgctaaaagccggacgcgagccctcgctggaggatctcaccagccag
cagaccgaagttgagctacggatgccgtcgctgctgccggacgacttcatccccgacgtc
aatacgcgcctgtcgttctacaaacgcgttgccagcgcgaagaacgagaatgagctggag
gagatcaaagtcgagcttatcgatcgctttggcctgctgccggatccggcaagaaacctg
ctcgacatcgcccgactgcgccagcaggcgcagaagctggggatccgtaagctggagagc
aacgaaaaaggcggcaccattgagtttaacgagaagaataacgttaacccggtgtggctg
attagtctgttgcagaagcagccccagcactatcgcctggacggcccgacgcgtctgaag
tttatgcaggatctcgccgagcgtaaaacgcggatggagtgggtgcgccagtttatgcgc
cagctggaagagaacgccaccgcctga
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