Klebsiella huaxiensis: DA718_02155
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Entry
DA718_02155 CDS
T05915
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
klw
Klebsiella huaxiensis
Brite
KEGG Orthology (KO) [BR:
klw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
klw03016
]
DA718_02155
Enzymes [BR:
klw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DA718_02155
Transfer RNA biogenesis [BR:
klw03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DA718_02155
Prokaryotic type
tRNA splicing ligases
DA718_02155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QBG06065
LinkDB
All DBs
Position
470045..471256
Genome browser
AA seq
403 aa
AA seq
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MNYELMTTQNAPVKMWTKGVPVEDDARQQLINTAKMPFIFKHIAVMPDVHLGKGSTIGSV
IPTKGAIIPAAVGVDIGCGMNALRTNLTAADLPDLPALRQAIETAVPHGRSNTRSRRDVG
AWENPPVNVNEKWAQLEAGYQWLTQKYPRFLNTNNHKHLGTLGTGNHFIEICLDEADQVW
IMLHSGSRGIGNAIGTYFIGLAQQEMQDQLETLPSRDLAYFDEGTEYFDDYLRAVSWAQM
FASLNRDAMMENTLAALQKCVDKPITLSMEAINCHHNYVQKEQHFGEEVFVTRKGAVSAQ
KGQLGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKKLFSVDDQIRATAHVE
CRKDADVIDEIPMAYKDIDAVMTAQSDLVEIVHTLRQVVCVKG
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgaattacgaattaatgactacccagaatgcaccggtaaaaatgtggactaaaggcgtg
ccggtagaagacgatgctcgtcagcaactgatcaatacggcgaaaatgccgtttattttc
aaacatattgccgtgatgccggatgtgcacttgggtaaaggatcgaccatcggtagcgtg
atcccgactaaaggggcgattatcccggccgcggtgggcgtggatatcggctgtggaatg
aatgcgctgcgtaccaacttaacggcggcggatctgcccgatcttccggcgctgcgtcag
gcgattgaaaccgccgtgccgcacggtcgttccaatacgcgtagccgtcgtgacgttggc
gcatgggaaaaccctccggtcaacgtgaatgagaaatgggcgcaactggaggcgggatat
cagtggttaacgcaaaaatatccgcgttttttgaacactaataaccataagcatctggga
acgttgggaaccggtaaccactttattgaaatttgtctggatgaagccgatcaggtgtgg
attatgctgcactctggttcacgtggaataggtaatgccatcggtacgtattttatcggc
ctggcgcagcaagagatgcaggatcaactggaaacgctgccgtcccgcgatctggcgtat
tttgatgaaggtactgaatactttgatgattatctgcgagcggtgagctgggcgcagatg
ttcgccagcctgaaccgtgatgcgatgatggaaaatacgctggcggcgctacagaaatgc
gtggataaacccattacgctcagcatggaggcgattaactgccaccataactatgtgcaa
aaagagcagcactttggtgaagaggtcttcgtgacccgtaaaggtgcggtatccgcgcag
aaggggcagttagggatcattccaggttccatgggggcgaaaagctttattgtgcgtggc
ctgggtaacgaagagtcgttctgctcgtgcagtcacggtgccggacgggtgatgagccga
accaaagcgaaaaaactgtttagcgtcgacgatcagattcgcgctaccgcgcatgtagaa
tgtcgtaaggatgcggacgttatcgacgagattccgatggcctataaagatattgatgcg
gtgatgaccgcgcaatccgatctggtggaaattgtgcatacgttgcgtcaggtggtgtgc
gttaagggataa
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