Klebsiella sp. PCX: GQR96_02085
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Entry
GQR96_02085 CDS
T11064
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
klx Klebsiella sp. PCX
Pathway
klx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
klx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GQR96_02085 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
klx03019
]
GQR96_02085 (rnr)
03016 Transfer RNA biogenesis [BR:
klx03016
]
GQR96_02085 (rnr)
Enzymes [BR:
klx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GQR96_02085 (rnr)
Messenger RNA biogenesis [BR:
klx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GQR96_02085 (rnr)
Transfer RNA biogenesis [BR:
klx03016
]
Prokaryotic type
tRNA degradation factors
GQR96_02085 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
TFIIE_beta
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
UKB68060
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All DBs
Position
448297..450735
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AA seq
812 aa
AA seq
DB search
MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAIELNIEGEEQTEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEIMGARMGYVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYVWPPA
VENQVSGLKEQVPEEAKAGRVDLRSLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPGTPLDAEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQELREHYAPLVKHIEELHNLYKVLDGA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAQEP
ALFRIHDKPSTEAITAFRSVLAELGLELPGGNKPEPRDYAELLTSIADRPDAEMLQTMLL
RSMKQAVYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAKEQGHKGNSTETG
GWHYSMEEMLQLGEHCSMTERRADEATREVSDWLKCDFMQDQVGNIFSGVIASVTGFGFF
VRLNDLFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVRVEAVNMDERKI
DFTLISSERAPRNVGKTAREKAKKSTSGKPGGRRRQVGKQVNFEPDSAFRKEKDQAKAKP
KGEKKAKKPSAKTQKIAAATKAKRAAKKKSAE
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatccattccaggaacgcgaagctgagaagtacgcgaacccaatcccgagc
cgggaatttatcctcgaacatttaaccaaacgggaaaagcccgccagccgcgatgagctg
gccatcgagttaaatatcgagggcgaagagcaaaccgaagcgctgcgccgccgcctgcgc
gcgatggaacgcgacggtcagctggtcttcacccgccgtcagtgctatgcgctgccggag
cgccttgatctcctcaaaggaaccgttattggtcaccgtgatggctatggtttcctgcgt
gttgaagggcgcaaagacgatctgtacctgtcgtcagagcagatgaaaacctgtattcat
ggcgaccaggtgctggcccaaccgctgggcgcggaccgcaagggccgccgcgaagcgcgc
atcgtccgcgtcctggtgccgaaaaccagccagattgttggccgctactttaccgacgct
ggcgtcggtttcgtcgtcccggacgacagtcgcctcagcttcgatatcctgatcccgccg
gaagagattatgggcgcgcggatgggctacgtggtggtggtcgagctgacccagcgcccg
acccgccgcaccaaagccgtggggaaaatcgtcgaagtgctgggcgacaacatgggtacc
ggcatggctgtcgatatggcgctgcgcacccatgaaattccgtacgtctggccgccggcg
gtagaaaatcaggtttccggcctgaaagagcaggtgccggaagaggcgaaagccgggcgc
gtcgatctgcgctccctgccgctggtcactattgacggtgaagatgcccgcgacttcgat
gacgcagtgtactgcgagaagaaacgcggcggcggctggcgcctgtgggtagccattgcc
gacgtcagctactacgtgcgtccggggacgccgctggacgcggaagcgcgcagccgtgga
acctcggtctacttcccgtcgcaggtggtaccgatgctgccggaagtgttgtctaacggt
ctgtgctcgctgaacccgcaggtcgatcgcctgtgcatggtgtgcgagatgacgatttcg
tcaaaaggccgtctgaccggttataaattctatgaagcggtgatgagttcacatgctcgc
ctgacctataccaaggtgtggcatatactgcagggcgaccaggagctgcgcgagcactac
gcgccgctggtgaagcatattgaagaactgcataacctctacaaggtgctggatggcgcc
cgcgaagagcgcggcggtatctcatttgaaagtgaagaagctaaattcatcttcaacgcc
gagcgccgtatcgagcgtatcgaacagacccagcggaacgatgcgcacaagctgattgaa
gagtgcatgatcctggcgaacatctccgccgcgcgcttcgttgagaaggcgcaggagccg
gcgctgttccgtattcacgataagccgagcaccgaggcgattaccgcgttccgcagcgtg
ctggcggagctggggctggaactgcctggcggcaacaagccggagccgcgcgattacgcc
gaactgctgacctccatcgccgatcgcccggatgcggagatgcttcagacgatgctcctg
cggtcgatgaagcaggcggtctacgatccggaaaaccgcggccactttggcctcgcgctg
cagtcctatgctcacttcacctcgccgatccgtcgttacccggatctgtcgctgcaccgc
gccatcaaatatctgctggccaaagagcaggggcataaaggcaacagcacggagaccggc
ggctggcactacagcatggaagagatgctgcagctgggcgagcactgctcgatgaccgaa
cgccgcgctgatgaagcgacgcgcgaagtctccgactggctgaagtgcgacttcatgcag
gatcaggtaggcaacatcttctccggggttatcgccagcgtgaccggctttggcttcttc
gtccgtctcaacgatctgtttatcgacggcctggtgcatgtttcctctctggataacgac
tactatcgtttcgaccaggtggggcagcgtctgatcggcgagtccggcgggcagacttat
cgcctgggcgaccgcgtggaagtccgtgtggaagcggtcaacatggacgagcgtaaaatc
gactttaccctaatctccagcgagcgcgcgccgcgtaatgtcggcaaaaccgcccgtgag
aaagcgaaaaagagcacctccggcaaaccgggcggccgtcgtcgtcaggtcggtaagcag
gtgaacttcgagccggacagcgcgttccgcaaagaaaaagaccaggcgaaagcgaagccg
aaaggcgagaagaaagcgaaaaaaccgtcggcgaaaacgcagaaaatcgccgccgccacc
aaagccaagcgcgcggcaaagaagaagagcgccgagtga
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