Klebsiella sp. PCX: GQR96_21410
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Entry
GQR96_21410 CDS
T11064
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
klx Klebsiella sp. PCX
Pathway
klx02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
klx00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GQR96_21410 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
klx03021
]
GQR96_21410 (rpoD)
Transcription machinery [BR:
klx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GQR96_21410 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_SUN2
Motif
Other DBs
NCBI-ProteinID:
UKB71585
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Position
4482492..4484333
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AA seq
613 aa
AA seq
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MEQNPQSQLKLLVQRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA
KRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDMAPTATH
VGSELSQEEMDDDEDEDEDEDADDNSDDDNSIDPELAREKFAELRTQYELTRDTIKAKGR
SHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRSMMDRVRTQERIIMKLCVEQCKMPKK
NFITLFTGNETSETWFNAAVAMNKPWSEKLLEVKEDVQRGLQKLQQIEEETGLTIEQVKD
INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP
EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESL
RAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSEVLRSFLDD
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagcttcttgtccaacgtggtaaggagcaaggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgattccgatcag
atcgaagacatcatccaaatgatcaacgacatgggcattcaggtgatggaagaagcaccg
gatgccgatgatctgatgcttgccgaaaacaccgcggatgaagatgctgccgaagccgcc
gcgcaggtgctctccagcgtggaatccgaaatcgggcgtacgaccgacccggtgcgcatg
tacatgcgtgaaatgggtaccgtagagctgctgacccgtgaaggcgaaatcgacatcgcc
aaacgcattgaagacggcatcaaccaggtgcagtgctccgttgccgaatacccggaagcg
atcacctacctgcttgagcagtacgaccgtgtggaagcggaagaagcccgtctgtccgat
ctgatcaccggtttcgtcgatccgaacgccgaagaagatatggcgccgaccgccacccac
gttggctccgagctgtctcaggaagagatggatgacgacgaagacgaagacgaagatgaa
gacgccgacgacaacagcgatgacgacaacagcatcgaccctgagctggcccgtgagaag
ttcgccgagctgcgtacccagtacgagctgacgcgcgacactatcaaagccaaaggtcgt
agccatgccgccgcccaggaagagatcctgaagctgtctgaagtcttcaagcagttccgc
ctggtgccgaagcagttcgattacctggtcaacagcatgcgtagcatgatggatcgcgtt
cgtactcaggaacgtatcatcatgaagctgtgcgttgagcagtgcaaaatgccgaagaaa
aacttcatcaccctgttcaccggcaacgaaaccagcgaaacctggttcaacgccgcggtg
gcgatgaacaagccgtggtccgagaagctgctggaagtgaaagaagacgtgcagcgcggc
ctgcagaagctgcagcagatcgaagaagagaccggcctgaccatcgagcaggtgaaggat
atcaaccgtcgcatgtccatcggtgaagcgaaagcccgccgtgcgaagaaagagatggtg
gaagcgaacctgcgtctggttatctctatcgccaagaaatacaccaaccgcggtctgcag
ttcctcgacctgattcaggaaggcaacatcggtctgatgaaagcggtggataagttcgaa
taccgtcgcggctacaagttctcgacctacgctacctggtggatccgtcaggcgatcacc
cgctccatcgcggatcaggcgcgcaccatccgtattccggtgcatatgattgagaccatt
aacaagctcaaccgtatctcccgtcagatgctgcaggagatgggccgtgaaccgaccccg
gaagagctggctgagcgcatgctgatgccggaagacaaaatccgtaaagtgctgaagatc
gccaaagagcctatctccatggaaacgccgatcggcgacgatgaagattcgcatctgggg
gatttcatcgaggataccaccctcgagctgccgctggattccgcgaccaccgagagcctg
cgtgcggcaacgcacgacgtgctggccggccttaccgctcgtgaagcgaaagtcctgcgt
atgcgtttcggtatcgacatgaacaccgaccacacgctggaagaagtgggtaaacagttc
gacgttactcgtgaacgtatccgtcagatcgaagcgaaggcgctgcgtaaactgcgccac
ccgagccgttctgaagtgctgcgtagcttcctcgacgattaa
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