Klebsiella sp. PCX: GQR96_21890
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Entry
GQR96_21890 CDS
T11064
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
klx Klebsiella sp. PCX
Pathway
klx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
klx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GQR96_21890 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
klx03019
]
GQR96_21890 (deaD)
03009 Ribosome biogenesis [BR:
klx03009
]
GQR96_21890 (deaD)
Enzymes [BR:
klx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GQR96_21890 (deaD)
Messenger RNA biogenesis [BR:
klx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GQR96_21890 (deaD)
Ribosome biogenesis [BR:
klx03009
]
Prokaryotic type
rRNA helicases
GQR96_21890 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
Cas3-like_C_2
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UKB71672
LinkDB
All DBs
Position
complement(4579775..4581706)
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AA seq
643 aa
AA seq
DB search
MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAF
SLPLLNNIDPELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLSKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPTAEGEELD
VETLAAALLKMAQGERSLIVPPDAPMRPRREFRDRDDRFERRGDRNDRAPRGDREDRPKR
ERRDVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMP
GEVLQHFTRTRILNKPMNMQLLGDAQPRTERRGGGERREGGRSFGGERREGGRGFGGERR
EGGRGDGRRFSGERREGRAPRRDDASAPRRDDSAGRRRFGGDA
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctgggcctgaaggctcctatccttgaagcg
cttaacgatctgggttacgaaaaaccatctccgatccaggctgagtgcattccgcatctg
ctggacggccgcgacgttctgggtatggcccagaccggtagcggtaaaaccgcagcgttt
tctttaccgctgctgaacaacatcgatcctgagctgagagcaccacagatcctggtgctg
gcgccgacccgcgagctggcggtacaggttgctgaagcaatgacggaattctctaaacat
atgcgcggcgtaaacgtggttgccctgtacggcggccagcgttatgacgtgcagctgcgc
gccctgcgtcagggtccgcagattgttgtcggtaccccgggtcgtctgctggaccacctg
aagcgcggcaccctggacctctctaaactgagcggtctggtactggatgaagcagatgaa
atgctgcgcatgggctttatcgaagacgtagaaaccattatggcgcagatcccggaaggg
catcagaccgcgctgttctccgccaccatgccggaagcgatccgtcgcattacccgccgc
tttatgaaagagccgcaggaagtgcgtattcagtccagcgtgaccactcgtccggacatc
agccagagctactggactgcctacggtatgcgtaaaaacgaagcgctggtgcgtttcctg
gaagcggaagattttgatgcggcgattatcttcgtccgtaccaaaaacgcgaccctggaa
gtggctgaagcgctggagcgtaacggctacaacagcgcggcgctgaacggcgacatgaac
caggcgctgcgtgagcagaccctggagcgtctgaaagacggtcgtctggatatcctgatt
gcgactgacgtggcagcccgtggtctggacgttgaacgtatcagcctggtggtgaactac
gacatcccgatggattctgaatcctacgttcaccgtatcggtcgtaccggtcgtgcgggc
cgcgcgggccgcgcgttgctgttcgttgagaaccgtgaacgtcgtctgctgcgcaacatc
gaacgtacgatgaagctgaccatcccggaagtggaactgccgaacgcagagctgctgagc
aagcgtcgtctggaaaaattcgccgcgaaagtccagcagcagctggaaagcagcgatctg
gaccagtaccgtgcgctgctggcgaaaatccagccgacggcggaaggcgaagagctggac
gtggaaacgctggctgccgcgctgctgaaaatggcccagggcgaacgctcgctgatcgtg
ccgccggatgcgccgatgcgtccgcgtcgtgagttccgtgaccgtgacgatcgcttcgag
cgtcgtggcgaccgcaacgatcgcgctccgcgtggcgatcgcgaagatcgtccgaagcgt
gagcgtcgtgacgtaggcgatatggaactgtatcgcattgaagtgggtcgcgatgacggt
gttgaagtgcgtcatatcgttggcgcgatcgctaatgaaggcgatatcagcagccgctac
atcggtaacatcaagctgttcgcttctcactccaccatcgaactgccgaaagggatgccg
ggcgaagtgctgcagcactttactcgtacccgcatcctgaacaagccgatgaacatgcag
ctgctgggcgatgcgcagccgcgcaccgaacgtcgtggcggtggtgaacgtcgtgaaggc
ggtcgtagcttcggcggtgagcgtcgtgaaggcggtcgtggcttcggtggcgagcgtcgt
gaaggtggtcgtggtgatggtcgtcgtttcagcggcgaacgtcgtgaaggccgtgcgccg
cgtcgtgacgatgcatccgcgccgcgccgcgatgactctgccggtcgccgtcgcttcggt
ggcgatgcataa
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