Koleobacter methoxysyntrophicus: H0A61_01317
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Entry
H0A61_01317 CDS
T07090
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
kme
Koleobacter methoxysyntrophicus
Pathway
kme03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
kme00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H0A61_01317 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kme03021
]
H0A61_01317 (rpoC)
03400 DNA repair and recombination proteins [BR:
kme03400
]
H0A61_01317 (rpoC)
Enzymes [BR:
kme01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H0A61_01317 (rpoC)
Transcription machinery [BR:
kme03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H0A61_01317 (rpoC)
DNA repair and recombination proteins [BR:
kme03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H0A61_01317 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QSQ08960
UniProt:
A0A8A0RMY0
LinkDB
All DBs
Position
1393328..1396870
Genome browser
AA seq
1180 aa
AA seq
DB search
MLELNNFDSMRIGLASPEQIREWSRGEVKKPETINYRTLKPEKQGLFCEKIFGPTKDWEC
HCGKYKRVRYKGIVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRSLEKVLYFASYIVIDPGDTPLMKKQLLTEKEYRDYREKYGNAFKAGMGAEAIKELLE
EIDLEKLSKELRKELKDSSGQKKVRTIRRLEVVEAFRKSNNRPEWMILEVIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVIGPELQLYQCGLPKE
MALELFKPFVMKKLVNEGYAHNIKSAKRMVERVKPEVWDVLEDVIREHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIKIHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLSANNIL
KPQDGKPVVTPTQDMVLGAYYLTVEKEGEKGEGKVFSDFDEVIMAYQMGVVALHAKIKVR
VSREIDGKTYSKLIETTPGRVIFNEVIPQDLGFVNRQEEDKLLELELNTLVDKGLLGEIV
ARCYRKHGITETAFMLDKIKKLGFNFATKAGTTIGVTDIEVPAQKEEILSKAEEKVDEIE
LQFRRGLISDEERYEKVISVWTQATDEVTEVLMESLDRFNPVYMMAISGARGGKQQIRQL
AGMRGLMANPSGRIIELPIKANFREGLTVLEYFISTHGARKGLADTALRTADSGYLTRRL
VDVSQDVIVREEDCGTTEGVVVKEIRDGNEVIESLDDRIVGRIAADDVVHPETGEVIVKE
QELIDEDKAEEILRAGIESVKIRSVLTCKSRHGVCVKCYGRDLATGKIVNIGEAVGIIAA
QSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVEELFEARKPKGLAIITEIPGTVKVIETK
KKREVEISNEVEKRVYQVPYGARLKVSTGSMVEAGDELTEGSVNPHDILKIKGVRGVQMY
LLQEVQRVYRLQGVDINDKHIEVIIRQMLKKVKVEDAGDTDLLPGGLVDIFEFEDENNRV
IAQGGQPAEARRVLLGITKASLATDSFLSAASFQETTRVLTEAATKGKLDPLLGLKENVI
IGKLVPAGTGMSRYRNITVYAEDEQENEQMQESKEESAHS
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
ttgttagaactcaataattttgattctatgagaataggtctggcttcccctgaacagata
agggaatggtcaaggggggaagtaaaaaaacccgaaactataaattacaggacattaaaa
cccgaaaaacagggtctgttttgtgaaaagatttttggtcccacaaaagactgggaatgc
cactgcggtaaatacaaaagggtcaggtacaaagggatagtatgtgacaggtgtggtgtt
gaagtaacgaaatccaaggtgagaagggagcgcatggggcacattgaattagcggcccct
gtatcccatatatggtattttaaagggatccccagcagaatggggttgatacttgatatg
tcccccaggtctttggaaaaagtcctgtattttgcttcatatatagttatagacccgggt
gatacaccgctgatgaaaaagcagctccttacagaaaaggaatacagagactacagagaa
aagtacggcaatgcttttaaagcaggaatgggagcggaagcaataaaagaactccttgaa
gagatagaccttgaaaagctttcaaaggaactgagaaaggaactgaaggattcttcaggc
cagaaaaaggtaagaactatcagaaggcttgaagtagtagaggccttccggaagtcaaat
aacaggccggagtggatgatcctcgaggttattccggttattccaccggacttaaggcct
atggtacagctggatggaggtagatttgccacatcggacctaaatgacctttacaggcgg
gtaataaacagaaataatcgcctcaagaggctgctggacctgggggcacccgatataata
gtaagaaacgaaaagaggatgctccaagaagccgttgatgcccttatagataacggccgg
cggggcaggcctgtaacgggaccgggtaaccggcctctgaaatccctgagcgatatgctg
aaaggcaaacagggaagattccgccagaatctgttgggcaaaagggtagattattcagga
cggtctgttatagttataggccccgaactgcagctgtaccagtgcggtttgcctaaagaa
atggctttggaactctttaagcccttcgtaatgaaaaagcttgtaaatgaaggttatgcc
cacaatataaagagtgccaaaagaatggtagagcgggtaaagccggaggtgtgggatgtc
ctcgaagatgtaataagagaacacccggtgttattaaacagggcacctacccttcaccgt
ctgggaattcaggcctttgaacccgttcttgtcgaaggtagagccatcaaaatccatccg
ctggtatgcacggcatataatgcagattttgacggtgaccagatggcggtccatgttccc
ttatctgcagaagcccaggctgaagccaggttattaatgctttcagccaataatatttta
aagccgcaggacggtaagccggtagtgacccctacccaggacatggtcctcggagcatat
tacctgaccgttgagaaagaaggagaaaagggtgaaggcaaggtcttttcagattttgat
gaagtgattatggcatatcagatgggagttgtagcccttcatgcaaagataaaggtcagg
gtttccagggaaatagacgggaagacctacagcaagctgatagaaactacccccggaagg
gtaatcttcaatgaagttataccccaggacctgggttttgtaaaccggcaggaggaagat
aagctcctggaactcgaattaaataccttagttgacaaagggctgctaggtgaaatagtt
gccagatgctataggaagcatggtatcacggaaaccgctttcatgctggataaaatcaag
aagttaggctttaattttgcaacaaaagccggtacgaccatcggagttactgacattgaa
gtgccggcccaaaaggaagaaatcctttctaaggccgaggagaaagtcgacgagattgaa
ctccagttcagaaggggtttaatctctgatgaagaaagatatgaaaaggtcataagcgta
tggacccaggccaccgacgaggttacggaggttttaatggaatccctggatagattcaat
ccggtatatatgatggctatttccggagcaaggggaggaaaacagcagataagacagctg
gcagggatgaggggcctgatggccaacccctcagggagaataatagagctgcctatcaag
gctaatttccgtgaagggctcaccgtgctggagtactttatttcaacccatggagcaaga
aaaggtctggctgatacggccttaagaaccgccgattccggttaccttaccagaaggctg
gtagatgtaagccaggatgttatagttagggaggaggactgcggcactacggaaggtgtt
gtagttaaggaaatacgggacgggaacgaggtcattgaaagcctggatgataggatagtt
ggcaggatagccgctgatgatgttgtccatcccgaaacgggtgaggttatagttaaagaa
caggaactgatagatgaagataaagctgaggagatcctgagggccggtatagagagtgtg
aagatacgatctgtccttacctgcaagtcaagacacggggtatgtgttaaatgctatgga
agagacctcgcgacaggtaaaatagttaatataggggaagctgttgggataatagcagcc
cagtccataggagagccgggaacccagctgaccatgaggaccttccataccggtggtgtt
gcaggagacgatataacccaaggtcttcctagagtagaagaactttttgaagcgagaaag
cccaaaggtttggctataattacggagatacccggtaccgttaaagttatagaaaccaag
aagaagagggaagtagagatttcaaatgaggtggaaaagagggtgtatcaggttccatat
ggagccagattaaaagtatctaccggtagtatggtagaagcaggggatgaattaactgaa
ggttccgttaacccccacgacatactgaaaattaaaggagtgaggggcgtgcagatgtac
ctccttcaggaagtccagagggtatatcgcctccagggggttgatattaatgataagcat
atcgaagttataataagacagatgctgaaaaaggtgaaggtagaggatgccggagataca
gacctgctgccgggaggcctggtagatatatttgagtttgaagatgaaaataacagggta
attgcccagggagggcagcctgccgaggcgagacgggtgcttttagggataaccaaggct
tcccttgctacagattcgttcctttcagcggcttccttccaggagactaccagggtattg
acggaagctgccactaaaggcaagttagatcccctccttgggttaaaggaaaacgttata
ataggcaaactggtgccggcggggaccggaatgagccgctacagaaatataaccgtatat
gcggaagatgaacaggaaaatgaacaaatgcaggaaagcaaagaagaatccgcccacagt
tga
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