Koleobacter methoxysyntrophicus: H0A61_02734
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Entry
H0A61_02734 CDS
T07090
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
kme
Koleobacter methoxysyntrophicus
Brite
KEGG Orthology (KO) [BR:
kme00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
kme03016
]
H0A61_02734 (rtcB)
Enzymes [BR:
kme01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
H0A61_02734 (rtcB)
Transfer RNA biogenesis [BR:
kme03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
H0A61_02734 (rtcB)
Prokaryotic type
tRNA splicing ligases
H0A61_02734 (rtcB)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QSQ10330
UniProt:
A0A8A0RS23
LinkDB
All DBs
Position
complement(2782633..2784060)
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AA seq
475 aa
AA seq
DB search
MIRLTKIGKNKFLLPKTGNMRVDAVVYLSEKLFRDFQEGEALEQLKNAATLPGVYGVVIG
MPDIHSGFGLPIGGVMATRVEDGVISAGGVGMDINCGVRLLSTSIPADELDKRFLRKLMD
AIEDRIPTGIGKGSRHGNLYKSHFKEIVQRGAIKLIEMGYGREEDLECIEENGCLDGADI
AAVSDEAVSRGNQLATLGGGNHFIDLGVVEDIYNEKLAEVFGLKKGTLSIMIHTGSRGFG
HQICTDYTRIMVNTAPRYGIDLPDKGLACVPISSAEGRQYYKAMCCGVNFAFANRQLITY
DVREAFREVFNRDDDELGLDLVYDVAHNIAKFETHFNRRLLIHRKGATRALPPGHPSNPK
KYMETGHPAIIPGSMGTASYVVVGTELARETFFSINHGAGRVLSRGAARKEISQQEFESA
MADILYNTRNYKKVLDEAPQAYKDIDEVVNTLSEIGITRKIAKLRPLGVIKGEGD
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgatacgcttaacgaaaatagggaaaaataaatttttgcttcctaaaacaggtaatatg
agggttgatgcagttgtatatttgagtgaaaagctttttcgagattttcaggaaggagaa
gccctggaacagctaaaaaacgcggcaacccttccgggagtatacggggtggtaataggg
atgcccgatatccattcggggtttggtttaccaatcgggggagtaatggctacccgggtt
gaagatggggtaatctctgccggcggggttggaatggatattaactgtggggtgcggctg
ttatccaccagcattccggcagacgaactggataaaaggtttttgaggaagcttatggat
gccattgaagataggatacctacgggcataggcaaagggagcagacacgggaatttatac
aagtcccattttaaagaaatagttcaacggggagctataaaactgatagaaatgggttat
ggcagggaagaggacctggagtgtatagaagaaaacggctgtttggatggtgcagatata
gctgcagtatcggatgaagccgtttctagaggaaatcagctggctacccttggcggaggt
aaccattttattgatttaggggttgtagaggatatctataatgaaaagctggcggaggtc
ttcggccttaaaaagggcaccctttctatcatgatacataccgggagccgaggattcggt
caccaaatatgtaccgattacaccaggataatggtcaatacagcgccgcgttacgggata
gaccttcccgacaagggccttgcctgtgtacctattagttctgcagaaggaagacagtac
tataaagctatgtgctgtggagttaattttgcctttgcaaatcgtcagttgattacttat
gatgtgagggaagcctttagggaagtatttaatagggatgatgatgaactgggtcttgac
ctggtgtatgatgttgcccataacattgcaaagtttgaaacccatttcaaccggaggctg
ctaatacaccgcaagggggcaaccagagcccttcctcccggtcatccgtcaaatcctaaa
aagtatatggaaacaggtcatccggccataattcccgggagtatgggaaccgcttcgtat
gtagttgttggaacggaattggctcgtgaaaccttcttttcaataaaccacggtgcgggc
agagttttatccaggggcgcggctagaaaggagatatcccaacaggagtttgagtcagct
atggccgatatactttataataccaggaactataaaaaagtcctcgacgaggcaccccag
gcatataaggatatcgatgaggttgtaaataccttatctgagatcggtattaccagaaaa
atagctaaattaaggcccctaggagttataaagggtgaaggggattag
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