Kwoniella mangroviensis: 30162138
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Entry
30162138 CDS
T10313
Symbol
I203_107577
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
kmg Kwoniella mangroviensis
Pathway
kmg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kmg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
30162138 (I203_107577)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kmg03019
]
30162138 (I203_107577)
03041 Spliceosome [BR:
kmg03041
]
30162138 (I203_107577)
03009 Ribosome biogenesis [BR:
kmg03009
]
30162138 (I203_107577)
03016 Transfer RNA biogenesis [BR:
kmg03016
]
30162138 (I203_107577)
Enzymes [BR:
kmg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
30162138 (I203_107577)
Messenger RNA biogenesis [BR:
kmg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
30162138 (I203_107577)
Spliceosome [BR:
kmg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
30162138 (I203_107577)
Complex C
U4/U6.U5 tri-SnRNP related factors
30162138 (I203_107577)
Ribosome biogenesis [BR:
kmg03009
]
Eukaryotic type
Pre-60S particles
Helicases
30162138 (I203_107577)
Transfer RNA biogenesis [BR:
kmg03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
30162138 (I203_107577)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
nSTAND3
PBP_sp32
Motif
Other DBs
NCBI-GeneID:
30162138
NCBI-ProteinID:
XP_019005470
LinkDB
All DBs
Position
2:complement(<1930610..>1934724)
Genome browser
AA seq
1092 aa
AA seq
DB search
MAPKGSNSNSSAGPSTPREKKHKKRNAKERSVETSDRPIKSARIDEIDNNDDVEEEEEED
ETAQAGGDAMDMLDSGVGSSSKKGDAMEALESGQDVEGATVVKADEFETEAEREVEASKG
LDGAAAGEEGKMKLVHQVRHQVAVPPNYPYIPISQHKRNDPPAREYKFTLDPFQFVATSC
IERNESVLVSAHTSAGKTVVAEFAIATCLKEGRRVVYTSPIKALSNQKYREFLETFGDVG
LMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETI
ILLPHTVRYVFLSATIPNSMEFAEWITSTHEQPCHVVYTDFRPTPLQHYLFPAGSEGIYL
VVDERSNFREDNFQKAMAALAAGQGEDSADPNSGKGRKGNKTRKGGAMKGEKSDIYKIVT
LIMRRNLNPVIIFAFSKRECEDLAMQMQKFDFNTPDEASTVQQVFENAISGLSDDDKKLS
QIEGILPLLKRGIGIHHGGLLPILKEVIEILFQEGLIKALFATETFSIGLNMPAKTVVFT
SVRKFDGKDFRNLSGGEYIQMSGRAGRRGLDARGIVIMMCDEKIEPDAAKGMVKGQADRL
DSAFHLGYNMIINLMRVEGVSPEYMLERCFFQFQNSMSVPVLEKQLKEAEEARDAIVVEK
EDEISEYYELRQQLKEKGQDFQAVISHPSYSLKFLQAGRLVEIRDGDKDFGWCVVVAYNK
VVNPKGRTPIFTESDPPQKQYVVDVLTKVASGTASGNPKDRSSSGLIPPSGNDQGEVAII
ACSLTTVQAISQYRINLPKDLRGQSEKNTAFKAVGEIKKRMKDGPPLLDPIKSMGIEDKS
FKELVKKIAILEQRLGSLPITTSKDLPSLYDLYDQKQESISNVKQLKRKINSVHDILQLE
ELKSRKRVLRRLGFTTSDDVVEMKGRVACEISTGDELMLTEMMFGGTFNDLTPEQCAAVL
SCFVFQEKSEAKVRLKEELAAPLRVLQETARRIAKISNESGIPIVEEEYIQSFKVEMMDA
VLQWCKGAKFSDICNLTDIFEGSIIRCFRRLQELIRQMGQAAHAIGNTELEEKFGKSMEL
LERPNTVVFNPS
NT seq
3279 nt
NT seq
+upstream
nt +downstream
nt
atggcgccaaaaggtagcaacagcaactcctctgctggaccatcgactccacgagagaag
aaacataaaaagcgaaatgcaaaggaacgaagtgtcgaaacttccgatcgaccgatcaag
tctgctaggatagacgaaatcgacaacaacgatgatgtagaagaagaagaggaggaggat
gagaccgcacaagctggaggagacgctatggatatgctagactctggcgtaggatcttcc
tcaaagaagggtgatgctatggaagcgctggaaagtggtcaagatgtggaaggtgcgacg
gtcgtaaaagccgatgagtttgagacggaagctgagagggaagtggaagcttcgaaaggt
cttgatggagctgctgcaggagaagaagggaagatgaagttggttcatcaggttcgacat
caagttgctgttccacccaattacccatacataccgatatcccagcataagcgaaatgac
cctccagcaagagaatacaaattcactttagatcctttccaattcgtcgctacatcctgt
atagaacgtaatgagtcggtgttggtatcagcacatacatcagcaggtaaaacggtagta
gctgaatttgctatcgctacgtgtctgaaagaaggaaggagagtagtttataccagtcct
atcaaagcattatcgaatcagaaatatcgagaattcttagaaacgtttggtgatgtcgga
ttgatgactggagatgtcactatcaaccctactgcatcttgtttggtcatgactacggag
attctgcgatcgatgttgtataggggctcagaagtcatgagagaggttgcttgggtgata
ttcgatgaggtgcattatatgcgagataaggaacgaggtgtcgtctgggaagagactata
atcctactcccccacacagtccgatacgtcttcctatcagctactatacccaattccatg
gaattcgcagaatggattacgtcgacacacgaacaaccatgtcatgtcgtatatacggat
ttccgtcctacacccttacaacattaccttttccccgctggatccgaaggaatttatctg
gtcgtggatgaaaggagtaactttagggaagataatttccaaaaagccatggctgccctg
gctgcaggtcaaggtgaagattcagccgatccaaatagtggaaaagggaggaaagggaat
aaaaccaggaaaggtggtgcgatgaaaggtgaaaaatctgatatatacaagatcgttacg
ttgatcatgcgacgaaacctcaacccagtcatcatatttgcattttcaaagagggaatgt
gaagatctagctatgcaaatgcaaaaattcgatttcaatacacccgatgaagcttcgacc
gttcaacaggtattcgaaaatgccattagtggattatcagatgatgataagaaattatcc
caaatagaaggtatcttgccactccttaaaagaggtattggaatccatcatggtggtcta
ttacctatcttgaaagaggtaatagaaattttgttccaggaaggattgatcaaagctctt
ttcgctactgagactttctcaatcggattgaatatgcctgcgaagactgtcgttttcact
agtgttaggaaatttgatggaaaagatttcaggaatttatctggtggtgaatacatccaa
atgtcaggaagagccggacgaagaggtttggatgcacgaggaatagtcatcatgatgtgt
gacgagaagatcgaacctgatgctgcgaagggtatggtgaaaggtcaagcggatagattg
gattcagctttccacctaggttataatatgattatcaacctgatgagagtggagggtgtt
agtccggaatatatgctggaaaggtgtttcttccagttccagaatagtatgagtgtacct
gtcttggagaaacagctgaaagaagcggaagaggccagagatgcgattgtcgtagagaag
gaagatgagattagcgaatactacgaacttcgacaacagctaaaagagaaaggtcaagat
ttccaagctgtcatttcgcatccatcgtacagtttgaagttcttacaggctggtagattg
gtggagattcgagacggcgataaagatttcggttggtgtgtggttgtggcttacaacaag
gtcgttaatcctaagggtcgaacaccgatattcaccgaatctgatccacctcaaaaacaa
tatgttgtcgatgtcctcaccaaagtagcttctggtaccgcatccggtaatcctaaagat
cgatcttcatctggtttgatcccaccctccgggaacgatcaaggcgaggtagctatcata
gcttgttccctcactactgtacaggctatttcccagtataggatcaacttgcctaaagat
ttgagaggacagtcggagaagaacactgctttcaaagctgttggagagatcaaaaagaga
atgaaagatggcccacctctcttggatcctatcaaaagtatgggtattgaagataaaagt
ttcaaggaattggtcaagaaaattgccattctcgaacaacgattgggatctttacccata
acgacttccaaagatttaccaagcttgtatgatttgtacgatcaaaaacaagaatctatc
agtaacgtcaaacaactgaaacgaaaaatcaactcggtacatgacatactgcaattggaa
gagctcaaatctcgtaagagagtattaagaagattgggtttcacaacttcggatgatgtt
gttgagatgaagggaagagtggcatgtgaaatttcgacaggtgatgagttgatgttgact
gagatgatgtttggtggaacgtttaatgatttgacgccggaacaatgtgcggctgtcttg
agctgttttgtattccaggagaagtccgaagctaaagtccgtctgaaagaggaattggca
gctcccttacgtgtactgcaagaaacagcaaggaggatagcaaagatatccaacgaatct
ggtatacccattgttgaagaggaatatatacagagtttcaaagtggaaatgatggatgcg
gtcttacagtggtgtaaaggtgccaagttcagtgatatttgtaatctcaccgacatattc
gaaggatcgatcatcagatgttttaggagattacaagaattgatccgtcagatgggtcaa
gctgcacatgctattggtaataccgagctggaagagaagttcgggaagagtatggaattg
cttgaaagacctaacacagtggtgttcaatccttcgtaa
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