Klebsiella michiganensis RC10: VW41_00645
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Entry
VW41_00645 CDS
T03782
Name
(GenBank) RNA ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
kmi
Klebsiella michiganensis RC10
Brite
KEGG Orthology (KO) [BR:
kmi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
kmi03016
]
VW41_00645
Enzymes [BR:
kmi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
VW41_00645
Transfer RNA biogenesis [BR:
kmi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
VW41_00645
Prokaryotic type
tRNA splicing ligases
VW41_00645
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
DUF4402
Motif
Other DBs
NCBI-ProteinID:
AJZ87655
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All DBs
Position
144856..146082
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AA seq
408 aa
AA seq
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MQNNEFQLLAAENSAPIKMWTHGVPVEPEAREQLLNTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTKGAIIPAAVGVDIGCGMIAVRTSLAAGDLPDNLSGLRSAIEQAVPHGRTNTRS
RRDKGAWSTPPEEVDGHWSQLAPRFKRLTDKYPKLLKTNNYQHMGTLGTGNHFIEVCLDE
QQRVWVMLHSGSRGVGNAIGNLFIALAQKDMQQHMANLPDKNLAYFQAGSQHYDDYIEAV
EWAQDFARHNREVMMSRVLAALSRIVSKPFMTQQEAVNCHHNYVQQETHFGEEVLVTRKG
AVSAQKGQMGIIPGSMGAKSFIVRGLGNEQSFCSCSHGAGRSMSRTAAKNRFTVEDQIRA
TAHVECRKDSEVIDEIPMAYKDIDAVMAAQSSLVEIVHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgcagaataacgaatttcaactgttggcggcggaaaacagcgcgccgataaaaatgtgg
acccacggcgtaccggttgagccggaggcgcgcgagcaattgctgaacacggcgaagatg
ccgtttatttttaaacatctggcggtgatgccggatgtgcatctcggaaaaggatcaact
atcggcagcgttattcccaccaaaggcgccattataccggcggcggttggggtcgatatt
ggttgtggaatgattgccgtgcgcacctcgctggcggcgggcgatctgccggataacctc
agcggattgcgcagtgcgattgaacaggcggtgcctcatggccgaaccaacacgcgctct
cgccgtgataaaggcgcgtggagcacaccgcctgaagaggttgacgggcattggtcgcag
ctggcaccacgatttaagcgcctgacggacaaatacccgaagctgctgaaaaccaacaat
tatcaacatatggggacgttgggcaccggtaaccactttattgaagtttgtctggatgag
cagcagagagtatgggtgatgctgcacagcggatcgcgcggtgtgggaaatgccatcggg
aatctttttatcgccctggcgcagaaggatatgcagcagcacatggccaatctgccggac
aaaaacctggcttactttcaggcaggcagccagcactacgatgattacatcgaagcggtg
gagtgggcgcaggactttgcccgccataatcgggaggtcatgatgtctcgcgtgctggcc
gcgctgtcgcgtattgttagcaaaccgtttatgacgcagcaggaagcggtgaattgccat
cataactacgtgcaacaggaaacgcattttggtgaggaagtgctggtcacccgtaagggg
gctgtttcggcacagaaaggccagatgggcatcattccaggttctatgggggccaaaagc
tttatcgtgcgtggactgggaaacgaacaaagtttttgctcttgtagccacggcgccggg
cgctccatgagccgaacggcggctaaaaatcgctttaccgttgaggatcagatacgcgcc
accgcccatgttgagtgccgtaaagacagtgaagtgattgatgaaattccgatggcttat
aaagacattgatgccgtcatggcggcgcagtcttcgctggtggaaattgtgcatacgctc
cggcaggtcgtctgtgtaaaaggataa
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