Klebsiella michiganensis RC10: VW41_08090
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Entry
VW41_08090 CDS
T03782
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
kmi
Klebsiella michiganensis RC10
Pathway
kmi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kmi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VW41_08090 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kmi03019
]
VW41_08090 (rne)
03009 Ribosome biogenesis [BR:
kmi03009
]
VW41_08090 (rne)
Enzymes [BR:
kmi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
VW41_08090 (rne)
Messenger RNA biogenesis [BR:
kmi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VW41_08090 (rne)
Ribosome biogenesis [BR:
kmi03009
]
Prokaryotic type
rRNA processing factors
VW41_08090 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AJZ88991
LinkDB
All DBs
Position
complement(1709917..1713141)
Genome browser
AA seq
1074 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYSSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAENRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRDAVSAIEKRQGGVRAIIVPNDQME
TPHYSVLRVRKGEETQTLSYMLPKLHEEEMAMPSDEEYTERKRPEQPALATFVMPEVPPA
PQETAAEKPAAAAVKPAAQPKADAAEQPGLVSRFFSALKKLFAGDSAAAEVKEVKEEKAA
GSDTQRQDRRNNRRQNNRRDRGERNDRGDRNNRDNRENRNNRDDRNNEGREAREPREGRD
ENRRNRRNGQQQNAEVREARQNVNAVDDADKQQKSRDEQQPRRERNRRRSDEKRQAQQEV
KALQQDNVVEQDAEQEERTQVMQRRKPRQLSQKVRIESADASSAVEETQVAQAVTEQAPV
ALPAVVEAPGNAEQQDENGENRETAGMPRRSRRSPRHLRVSGQRRRRYRDERYPAVSPMP
LAAACASPELASGKVFITYPVARPHDQLAQEEAFQAHEEVQHVNVAEAAAVEAVAPEEDV
QAIEPVKAVETVIEPAVVETTLPEVIAAPEAEQPQPVAAVDEAPAAETVEHITPAQEETV
QPAAETSEPAPVAVEAPAVEEVPVAVVEEVKPVVEAAPVVAAPATQEVNTESSAVAKHAT
APMTRAPAPEYTPEAPRHSDWVRPDFTFSGKGSAGGHSASHQATAPATRPQSAE
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcagcaagaagagttgcgtgtcgcccttgtagat
gggcaacgtctgtacgatctggacattgaaagcccgggacacgaacagaaaaaagcaaac
atctataaaggcaaaatcacccgtattgaaccaagtctggaagcggcgtttgttgattat
ggcgcagaaagacacggttttcttcctctgaaagaaatcgctcgcgaatacttcccttcg
aactactcttcccacggtcgcccgaacattaaagacgttctgcgcgaaggccaggaagtg
atcgtccagattgataaagaagaacgcggcaacaaaggcgcggcgttaaccacctttatc
agcctcgcgggcagctatctggttctgatgccaaacaaccctcgcgccggcggtatctct
cgccgtatcgaaggtgatgaccgcaccgaattaaaagaagcgctttcttcccttgaactg
ccggacggtatgggtcttatcgtacgtaccgcaggcgtgggcaagtctgccgaagcgctg
cagtgggatttgagcttccgcctgaagcactgggaagccattcagaaagccgctgagaac
cgccctgctcctttcctgattcaccaggagagcaacgttatcgttcgcgccttccgcgac
tacctgcgccaggacatcggcgaaatcctgatcgacaacccgaaagtgcttgagctggct
cgccagcatatcgccgccctgggtcgcccggatttcagcagcaaaattaagctctacacc
ggtgaaatcccgctgttcagccactaccaaattgagtcgcagattgagtccgccttccag
cgcgaagtccgtctgccgtccggcggttctatcgtcatcgatactaccgaagccctgacc
gccatcgacatcaactccgcgcgagcaacccgcggcggcgatatcgaagaaaccgccttc
aacaccaaccttgaagcggccgatgaaattgcccgtcagctgcgtctgcgcgaccttggc
ggcctgatcgttatcgacttcatcgacatgacaccggttcgccaccagcgcgcggttgaa
aaccgcctgcgtgaagccgttcgtcaggacagagcgcgtattcagatcagccacatttca
cgcttcggcctgctggaaatgtcacgtcagcgtctgagcccgtctctcggcgagtccagc
caccatgtgtgcccacgctgtagcggtaccggcaccattcgcgataacgaatctctgtca
ctctccattctgcgtctgattgaagaagaagcgctgaaagagaacaccaaagaagttcac
gccatcgtacctgtgccgattgcctcttacctgctgaacgaaaaacgtgatgcggtaagc
gcgattgaaaaacgtcagggcggcgtgcgtgcgattatcgtgccaaacgatcagatggaa
accccgcactattccgtactgcgcgtgcgtaaaggcgaagaaacccagactctgagctac
atgctgcctaagctgcatgaagaagagatggcgatgccatcggatgaagagtacaccgaa
cgtaagcgtcctgagcaacctgctctggctaccttcgtgatgccagaagtaccgccggca
ccgcaggaaaccgcggcggaaaaacctgccgctgcagcggtgaagcctgccgctcagcca
aaagcagatgccgctgaacaacccggtctggttagccgcttcttctctgcactgaaaaaa
ctcttcgccggcgatagcgctgccgcagaagtaaaagaagtgaaggaagagaaagccgcg
ggctctgatacccagcgccaggatcgccgtaataaccgtcgtcagaacaaccgccgcgat
cgtggcgagcgtaacgaccgcggtgaccgcaataatcgcgataaccgtgaaaaccgtaat
aaccgcgatgaccgcaacaatgaaggccgcgaagctcgcgagccgcgtgaaggtcgtgac
gaaaaccgtcgcaatcgtcgtaacgggcagcagcagaatgcggaagtccgcgaagctcgc
cagaacgttaatgccgtagacgacgcggataagcagcagaaatcccgtgacgaacagcag
ccacgccgtgagcgcaaccgtcgtcgttctgacgaaaaacgtcaggcacagcaggaagtc
aaagcgctgcagcaggacaatgttgttgagcaagatgccgagcaggaagaacgcacgcag
gttatgcagcgccgtaagccgcgtcagctaagccagaaagtacgtattgagtctgcggat
gcatcttctgcagtggaagagactcaggttgcgcaggcagttaccgagcaggcaccagtt
gcgcttcctgcggttgtagaagccccgggaaatgcagagcaacaggatgaaaacggcgaa
aaccgtgaaactgccggtatgcctcgtcgctcacgtcgctctcctcgccacctgcgcgta
agcggccagcgccgtcgtcgctatcgtgacgagcgctacccggcggtatctccgatgcca
ctggcagcagcatgcgcttctccagagctggcgtcagggaaagtgttcatcacctaccct
gttgctcgtccacacgatcagcttgcccaggaagaggcattccaggctcacgaagaggtc
cagcacgtcaacgtggctgaggctgcagcagtagaagccgttgcccctgaggaagatgtt
caggctatcgagccggtgaaagcggtggaaaccgttattgaacctgctgtggtggaaaca
accctgccagaagttattgcagcaccggaggcagaacagccgcagcctgttgctgcagta
gatgaagcgcctgccgcagagaccgtggaacacattactcctgcacaggaagaaactgtt
cagccggcagcagaaaccagcgagccggccccggtagcggtagaagccccggcggtcgaa
gaagtcccggtcgcggtggttgaagaggtgaaacctgttgtggaagcggcgcctgtagta
gccgcgccagcgacgcaagaagttaacactgaatcttcggctgtcgctaagcacgccaca
gcgccaatgacccgtgctccggctccggaatacacgcctgaagcgccgcgtcacagcgac
tgggttcgcccggactttaccttcagcgggaaaggctctgccggcggccacagcgccagc
catcaggcaacggcgccagccactcgcccacaaagcgctgaataa
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