Klebsiella michiganensis RC10: VW41_21040
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Entry
VW41_21040 CDS
T03782
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
kmi
Klebsiella michiganensis RC10
Pathway
kmi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kmi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VW41_21040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kmi03019
]
VW41_21040
03016 Transfer RNA biogenesis [BR:
kmi03016
]
VW41_21040
Enzymes [BR:
kmi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
VW41_21040
Messenger RNA biogenesis [BR:
kmi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
VW41_21040
Transfer RNA biogenesis [BR:
kmi03016
]
Prokaryotic type
tRNA degradation factors
VW41_21040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
OB_RRP5_4th
aRib
KH_2
S1_RRP5
DUF4172
KH-I_KHDC4-BBP
KH_SLS1_2
Spt6_S1
DUF5813
Motif
Other DBs
NCBI-ProteinID:
AJZ91329
LinkDB
All DBs
Position
complement(4547100..4549229)
Genome browser
AA seq
709 aa
AA seq
DB search
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT
VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV
NPQVHPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTAEELKTSKLDLVVA
GTESAVLMVESEAELLSEDQMLGAVVFGHDQQQIVIKEINALVAEAGKPRWDWQPEAVNE
ALNSRVAALAESRLSDAYRITEKQERYAQVDVIKADVIATLTAEDESLDAGELSDILHAI
EKNVVRSRILAGELRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR
DAQTLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPEADK
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD
ILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA
IDAPRGDISEFAPRIHTIKINPDKIKDVIGKGGAVIRALTEETGTTIEIEDDGTVKIAAT
DGDKAKHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQSPAEGAAPAAPEAE
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
ttgctaaatccgatcgttcgtaaattccagtatggccagcatacggtcacgcttgaaacc
ggcatgatggctcgccaggctaccgctgctgtaatggtaagcatggatgacaccgcggta
ttcgttaccgttgtgggccagaaaaaagccaagccaggccaggacttcttcccgctgacc
gttaactatcaggagcgtacctacgctgctggtcgtatccctggcagcttcttccgtcgt
gaaggccgcccaagcgaaggcgaaaccctgattgcgcgtctgattgaccgcccggttcgt
ccactgttccctgaaggtttcgtcaacgaagtgcaggttattgctaccgttgtttccgta
aacccacaggttcaccctgatatcgttgccatgatcggtgcttccgctgcactgagcctg
tccggtattccattcaacggcccaatcggtgccgctcgtgttggttacatcaatgaccag
tacgtgctgaacccgactgctgaagagctgaaaaccagcaagctggatctggttgttgcc
ggtaccgaaagcgcagtcctgatggttgagtccgaagctgagctgctgagcgaagatcag
atgctgggcgccgttgtcttcggtcacgaccagcagcagattgtcatcaaggaaatcaac
gcgctggttgccgaagccggcaaaccacgttgggactggcagccagaagccgtgaacgaa
gcgctgaattcacgcgttgccgcactggctgaatcccgcctgagcgatgcttaccgcatc
actgagaagcaagaacgttatgctcaggttgacgttatcaaagctgacgttatcgcaacg
ctgactgcggaagatgaatctctggatgcaggcgaactgtctgacattctgcacgctatt
gagaaaaacgttgttcgtagccgtatcctggcaggcgaactgcgtattgatggccgtgaa
aaagacatgattcgtggcctggatgtgcgcactggcgttctgccgcgtactcacggttct
gcgctgttcacccgtggtgaaactcaggcgctggtaaccgcaactctgggtaccgctcgt
gacgcacagacgctggacgagctgatgggcgaacgcactgacagcttcctgttccactac
aacttccctccgtactccgttggcgagaccgggatggtaggttctcctaagcgtcgtgaa
attggtcacggtcgtctggcgaagcgtggcgtgctggccgttatgccagaagctgataaa
ttcccgtacaccgttcgtgtggtttctgaaatcaccgaatctaacggttcttcttccatg
gcttccgtgtgtggtgcttctctggcactgatggacgctggtgtgcctatcaaagccgcc
gtggcgggtatcgcgatgggcctggtgaaggaaggcgacaactttgtggttctgtccgac
attctgggtgacgaagatcacctgggcgacatggacttcaaagtagccggtagccgtgaa
ggtatctctgcgctgcagatggatatcaaaattgaaggtatcacccgcgaaatcatgcag
gtggctctgaaccaggctaagggtgcgcgtctgcacattctgggcgtgatggaacaggct
attgatgcaccgcgtggcgacatctctgagttcgcaccacgtattcacaccatcaaaatc
aacccagacaagatcaaagacgtgatcggtaagggcggggctgtgattcgtgcgctgacc
gaagaaaccggcaccaccatcgaaatcgaagatgacggtactgtgaaaatcgcagcgacc
gacggtgataaagcgaaacacgctatccgccgtatcgaagagatcaccgctgaaatcgaa
gtgggccgtatctataacggtaaagtcactcgtatcgttgattttggtgcgtttgtggct
atcggtggcggtaaagaaggtctggttcacatctctcaaatcgctgacaagcgcgtagag
aaagtgactgactacctgcagatgggtcaggaagttccggtgaaagttctggaagttgac
cgtcagggccgcgtccgtttaagcattaaagaagcaaccgagcagtctccggcagaaggt
gcagcaccagctgcgccagaagctgagtaa
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