Kaustia mangrovi: HW532_01990
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Entry
HW532_01990 CDS
T07196
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
kmn
Kaustia mangrovi
Pathway
kmn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kmn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HW532_01990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kmn03019
]
HW532_01990
Enzymes [BR:
kmn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HW532_01990
Messenger RNA biogenesis [BR:
kmn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HW532_01990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QPC41602
UniProt:
A0A7S8C1K2
LinkDB
All DBs
Position
complement(420599..421885)
Genome browser
AA seq
428 aa
AA seq
DB search
MSQFETLGLSPSVLKQVLALGYDAPTPIQKEAIPLVLDGHDLMGLAQTGTGKTAAFGLPL
VDRLREENGKPAPKTIRALILAPTRELVNQIAGNLRDFVRGTPIKVGSVVGGASINVQIK
NLNRGTDILVATPGRLLDLVERRAVFLDTAKYLVLDEADQMLDLGFIHALRKIAKLVGTP
RQTLLFSATMPKQMEELARTYLNDPVRVEVAPPGRTADKVRQSVHFVEQSDKAALLRDCL
AETPEELSIVFSRTKHGAEKLMKTLVKHGFDAGSIHGNKSQGQRDRAIKAFRSGDIRVLV
ATDVAARGIDIPGVARVYNYDLPEVAESYVHRIGRTARAGAEGEAVAFCAPAEMSLLRGI
ERLVGIGISVAGGEPWRGGHEDAPRGRKGGGRPRGEGRPQRTGGRGKPQGQPDRNRRRSR
PRRKPVAA
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
ttgtcacagtttgaaactctcgggctttccccctctgttctgaaacaggtcctggcgctc
ggttacgacgcgccgaccccgatccagaaggaggcgataccgctcgttctcgacggccac
gacctcatgggcctcgcccagacaggcacgggcaagacggcggccttcggcctgccgctc
gtggaccggcttcgcgaggagaatggcaagcccgctccgaagacgatccgcgcactgatt
ctcgcgccgacccgggagctggtgaaccagatcgcgggcaatctccgcgatttcgttcgc
ggcacgccgatcaaggtgggctcggtcgtgggcggcgcctcgatcaatgtgcagatcaag
aatctcaatcgcggcacggacatccttgtcgccacgcccggtcgcctgctcgatctggtc
gagcgccgggcggtcttcctcgacacggcgaaatatctcgtcctcgacgaagccgaccag
atgctcgatctgggcttcatccatgccttgcgcaagatcgccaagctcgttggaacgccc
cgccagaccctcctgttctccgccaccatgccgaagcagatggaggagctggcgcgcacc
tatctgaacgaccccgtgcgcgtcgaggtcgcgcctccgggccggaccgccgacaaggtg
cgccagtcggttcatttcgtggagcagagcgacaaggcggcccttttgagggattgcctc
gcggaaacgccggaggaactctccatcgtcttctcgcgcaccaagcacggtgcggagaag
ctgatgaagactctggtcaagcacggcttcgatgccgggtcgatccacggcaacaagagc
cagggccagcgcgaccgcgccatcaaggcgttccggtcgggcgatatccgcgtgctggtc
gccaccgatgtcgccgcgcgcggcatcgacattccgggcgtggcgcgcgtctacaactac
gatctgccggaagtggcggagagctatgtgcaccgtatcggccgcaccgcgcgcgccgga
gcggagggcgaggccgtggcgttctgcgcgccggctgagatgtcgcttctgcgcggcatc
gagcggctggtcggcatcggcatctcggtggctggcggcgaaccgtggcgcggcgggcac
gaggatgcgccgcgcggccgcaagggtggtggccgtccgcgtggcgagggccgtccgcag
cggaccggtggccggggcaagccgcagggccagcccgaccgcaaccgcaggcggtcgcgc
ccgcggcgcaagcccgtggccgcgtga
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