Kaustia mangrovi: HW532_02215
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Entry
HW532_02215 CDS
T07196
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kmn
Kaustia mangrovi
Pathway
kmn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kmn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HW532_02215 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kmn03400
]
HW532_02215 (mfd)
Enzymes [BR:
kmn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HW532_02215 (mfd)
DNA repair and recombination proteins [BR:
kmn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HW532_02215 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
UvrB_inter
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
AAA_16
UB2H
SecA_DEAD
AAA_30
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QPC41641
UniProt:
A0A7S8HAN5
LinkDB
All DBs
Position
complement(466473..470012)
Genome browser
AA seq
1179 aa
AA seq
DB search
MTPKDTTALAGLFAAAGETTVSGVPEGYDALVLADLARLAHGRAGADGRESGRPVLHLAR
DDQRMSAIVEALRFFAPDVTVETFPAWDCLPYDRVSPRPEIAAERVATLSRLAEGAPSGP
TVVVATVNAAVQRVPEADTIGRASLSTAPGNLVDPERIQSFLAENGFSRTGTVLEPGEYA
VRGGIVDIYPPGFAEPVRLDFFGDTLESVRSFDPQSQRTTGQLKRFDLHPASEVLLNDET
VARFRTAYTSTFGGVTGNDELYEAVSAGRRYQGMEHWLPLFHETLSTLFDYADWALVSLD
HLAGDAMTARREQVSDYYEARRQAQDQDSFGAALYKPLPPERLYIEADEWAERLRRLPTA
DFTPFDVPETAGRRIVPLGGRQGRNFAPERAQKERNVFEALKRHMEALRSDGKRVVVACW
SDGARERLVNILHDHDISPVVEAVGWPEAASRDRQIVNVVTLGLETGFETPELAVIGEQD
ILGDRLIRRARKTRRASDFIQELSSLSPGDLVVHVDHGIGQFEGLRTIEVQGAPHDCLYI
TYAGNDRLFLPVENIELLSRYGSDEAGAQLDKLGGQGWQARKARLKERIKEMADQLIKTA
AARAMKSGDVMTPPDGLYEEFCARFPYEETEDQHDAIQAVIEDLQSGRPMDRLVCGDVGF
GKTEVALRAAFIAAMSGRQVAVVVPTTLLARQHYATFAERFRGLPMRIEQISRLVSRKDI
NEVKKGLASGDVDIVIGTHALLGTKNEFRDLGLLIVDEEQHFGVKHKERLKELRANVHVL
TLTATPIPRTLQLALTGVRDLSLITTAPLDRLAVRTFVTPFDPVTVRETLLREHYRGGQS
FYVCPRISDLGRISEFLAEQVPEVKVAVAHGQMASGELEDVMSAFYDRQYDVLLSTTIVE
SGLDIPTANTLIVHRSDMFGLAQLYQIRGRIGRSKQRAYALLTVPAERVLTPGAERRLKV
LQSLDSLGAGFSLASHDLDIRGAGNLLGDEQSGHIKEVGYELYQQMLEEAVASLRAGEEE
ADTERWSPQINIGTAVLIPEHYVEDLELRLGLYRRLADLGSDQEIQGFAAELRDRFGPLP
EEVEQLLQVVSIKLLCRAANIATVDAGPKGVVVGFRNGDFANPAGLVGYLNEQGALAKLR
PDHKLVLKRGWETEEERMKGVRSILKKLVKIAGEAAVAA
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgaccccgaaggatacgacagcgcttgccggactgttcgccgcggctggcgaaaccacc
gtctcaggcgtgccggaaggctatgacgcactcgttctcgccgatctggcaaggcttgcc
catggccgcgccggcgcggacgggcgcgagagcggccggccggtgctccatctcgcgcgc
gacgaccagcgcatgagcgcgattgtcgaggcgctgcggttcttcgcgcccgacgtgacg
gtggagaccttccccgcctgggactgcctgccctatgaccgtgtctcgccgcgcccggag
atcgcggcggaacgcgtggccacgctgtcgcggctggccgaaggcgccccctccggcccg
accgtcgtggtcgccaccgtgaacgccgccgtccagcgcgtgccggaggccgacaccata
gggcgcgcctctctgtcgacggcgcccggcaatctggtcgatcccgaacgcatccagagt
ttcctcgccgagaacggcttcagccggaccggcacggtgctggagcctggcgaatatgcg
gtgcgcggcggcatcgtcgacatctatccgccggggtttgccgagccggtgcggctcgat
ttcttcggcgacacgctcgaatcggtcaggagcttcgatccgcaatcccagcgcacgacc
ggccagctcaagcggttcgacctgcatccggcgagcgaggtcctgctcaacgacgagacc
gtcgcgcgctttcgcaccgcctatacctcgaccttcggcggggtgaccggcaatgacgag
ctctacgaggcggtgagtgcggggcgccgctatcagggcatggagcactggctgccgctg
ttccacgagacgctctccacgctcttcgactatgccgactgggcgctcgtcagcctcgac
catctcgccggcgatgccatgaccgcgcgccgcgagcaggtgagcgactattacgaggcc
cgccggcaggcgcaggatcaggacagcttcggcgcggcgctctacaagcccctgccgccg
gagcgtctctatatcgaggccgacgaatgggcggagcggctccgccgtcttcccactgcg
gatttcacgcccttcgacgtgccggagacggcgggccgccgcatcgtgccgctcggcggg
cgccagggccgcaacttcgcgccggagcgtgcccagaaggagcgcaacgtcttcgaggcg
ctgaagcggcacatggaggcgctgaggagcgacggcaagcgcgtggtggtggcctgctgg
agcgatggcgcgcgcgagcggctcgtcaatatcctccacgatcacgacatctcgccggtg
gtggaggcggtaggctggccggaggcggcctcgcgcgaccgccagatcgtcaatgtggtg
acgctcggcctggaaacgggcttcgagacgccggagcttgccgtgatcggcgagcaggac
attctcggcgaccggctcatccggcgcgcgcgcaagacgcgccgcgcgagcgacttcatc
caggagctgtcgagcctttctcccggcgacctcgtggtccatgtcgatcacggcatcggc
cagttcgagggattgcgcaccatcgaggtgcagggcgcgccgcacgactgcctctacatc
acctatgcgggcaatgatcggctgttcctgccggtggagaatatcgagctcctgtcgcgc
tacggctccgacgaggcgggcgcccagctcgacaagctcggcgggcagggctggcaggcg
cgcaaggcccgcctcaaggaacgcatcaaggagatggcggatcagctcatcaagacggct
gccgcccgcgccatgaagtccggcgatgtcatgaccccgccggacggactctatgaggag
ttctgcgcgcgctttccctatgaggagacggaggaccagcacgacgccatccaggccgtc
atcgaggatctccagagcggccggcccatggaccggctcgtgtgcggcgatgtcggcttc
ggcaagacggaggtggcgttgcgcgccgccttcatcgcggcgatgagtggccggcaggtc
gccgtcgtggtgccgaccacgctgctcgcccgccagcactacgcgaccttcgcggagcgc
ttccgcggcctgccgatgcgcatcgaacagatctcccgcctcgtctcgcgcaaggacatc
aacgaggtgaagaaggggctggcctccggcgatgtcgatatcgtcatcggtacgcacgcc
cttctcggtaccaagaacgaattccgcgatctggggctcctgatcgtggacgaggagcag
catttcggcgtcaagcacaaggagcggctgaaggagctgcgcgccaatgtgcatgtgctg
acgctgaccgccacgccgatcccgcgcaccctccagctcgccctgacgggcgtgcgcgac
ctgtcgctcatcaccaccgcgccgctcgaccggctggcggtgcgcactttcgtcaccccc
ttcgatcccgtcaccgtgcgcgagacgcttctgcgcgagcactatcgcggcggccagagt
ttctacgtgtgcccgcgcatctccgatctggggcggatctcggaattcctcgccgagcag
gtgccggaggtgaaggtcgccgtggcgcatggccagatggcgtcgggcgagctggaagac
gtcatgtcggccttctacgaccggcaatatgacgtgctgctgtccacgaccatcgtggaa
tcgggcctcgacatccccaccgccaacacgctgatcgtgcatcgctccgacatgttcggc
ctcgcccagctctaccagatccgcggccgcatcggccggtcgaaacagcgtgcctatgcg
cttctcaccgtgcccgccgaacgggtgctgacgccgggggcggaacggcggctgaaggtc
ctgcaatcgctcgattcgctgggcgcgggcttctcgctcgccagccacgatctcgatata
cgcggcgccggtaacctgctcggcgacgagcagtcgggccatatcaaggaggtcggctac
gagctctaccagcagatgctggaggaggccgtggcgagcctgcgcgccggcgaggaggag
gcggacaccgagcgctggtcgccgcagatcaatatcggcacggccgtgctcatcccggaa
cattatgtggaggatctggagcttcgcctggggctctaccgccggctcgccgatctgggg
tccgatcaggagatccagggcttcgcggcggagctgcgcgaccgcttcggcccgctgccg
gaggaggtggagcagcttctccaggtcgtctcgatcaagctcctgtgccgcgcggccaat
atcgccacggtcgatgccgggccgaagggcgttgtggtcggcttccgcaatggcgacttc
gccaatccggcggggctggtcggctatctgaacgagcagggcgcgctcgccaagctgcgt
cccgaccacaagctcgtgctcaagcgtggctgggagacggaggaggagcgcatgaaaggc
gtgcgctcgatcctgaaaaagctggtgaagatcgccggagaggccgctgtcgctgcttga
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integrated database retrieval system
