Kryptolebias marmoratus (mangrove rivulus): 108228245
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Entry
108228245 CDS
T05608
Symbol
col6a3
Name
(RefSeq) collagen alpha-3(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr04510
Focal adhesion
kmr04512
ECM-receptor interaction
kmr04518
Integrin signaling
kmr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108228245 (col6a3)
04518 Integrin signaling
108228245 (col6a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108228245 (col6a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
108228245 (col6a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
kmr04147
]
108228245 (col6a3)
00536 Glycosaminoglycan binding proteins [BR:
kmr00536
]
108228245 (col6a3)
Exosome [BR:
kmr04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108228245 (col6a3)
Glycosaminoglycan binding proteins [BR:
kmr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108228245 (col6a3)
Hyaluronan
Extracellular matrix or blood plasma proteins
108228245 (col6a3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Kunitz_BPTI
VWA_3
fn3
Motif
Other DBs
NCBI-GeneID:
108228245
NCBI-ProteinID:
XP_037832058
LinkDB
All DBs
Position
LG6:complement(2181929..2230708)
Genome browser
AA seq
3151 aa
AA seq
DB search
MRRHRLLPLCVLLGVLFAGLLPKLDAQDNCARGLGADLYFLVDSSWSMGEKNFEHVRQFL
YTLTQSLHQVGRGRFKFALVQYNSRPKTEFHLNSYPTTQDVLGHIKAMSYRGGGTRTGLG
LDYLIHSHLTTSSGSRAADGVAQVVVVLTDGRSQDDVSEPAQVLQMAGVEMFAVGVQDAV
DSELREMASQPHETHVFNVDSFLKLRDIIQDLVVSVCGAVTWSGGDPVANEAPVAGGGTA
QDSADLIFLIDGSENVGAANFPYVRDLILRVIEPLSVGSDAIRVALVQYSSYPEIKFNLN
RFYDKSQVLGAVKGLTYSGGAESNLGAAMEEVAESLLSETAGSRELEAVPQVLVIISAGP
SSDDTGVGDRALKRANVITLGVSIGDTAAANLEEVATDRRFVQRASDFRTLAATAGGLVS
TITDLAMGTIIIQNSFTEVVAAAQRDIIFLIDSTMGPVILTNVVNYIKQFVNSRPIGPDA
IQVGVAQFSSAQRVVMDLNTHDTRESLAAALDNIKPRSGQTINMGAALNFVRENMLRPEK
GSRMREGVPQVVMLWTSKKSSDGVQQPAEALLRRGVLIMAAGFKTANVDELNQIASSERV
VFSAKEFRQVMRKSREITDALSTLAGMVVIEEPTEPVVEITTVQTQKVVRDIVFLLDGSS
YIGNTNFPYVRDFMINLINHLDIRPDRVQIGLIQFAEQPRVEFYLNTYNNKDDVVNKISQ
LRLTGGYELNIGAAMNYALENMFVPPAGSRGVTTAQQVLVLITGGPSQDDAKIVADKLAL
AGVLTFTVTSGQADVEEMRKIAFVQDLAYHQPEFSDLPAMDEAVLPSLITVVGDTQTVIT
GDERDVAFLIDGTDSVRAEFPLIRDFILKVIEPLDIGPDKVRVSVVQHSERPTPTFYLKT
YQTKDEVLRAVRGMSLAGGRSLNTGVALRYMKDVAMSESYGSRSANDVPQFLIVLAADRS
ADNVKEPAGELKTEGVVPFGVGVKNADKKQMEEIAHNPSFAFKVKEFSELETIPQRLNNY
VSLPKDELMVLLQEAESQGPKKDIVFLVDGSVNVGREFPIIQEFIRRVVDSLNVGENKIR
IGVVQYGDYAQADMYLNSHTTKEGVLNGIRELRQRGGTQRNLGQALQVLRQDIMTPGRGS
RKQEGVPQFAIIVSSGPSTDNINREAISLKQSKVIPFSIGTRNVNPTELKVTSYVPSFAF
TVDDLPGLYTVQETLINKVTEMSDDDIARLRPEYTTFTAITPPPATGDKRDVVFLIDGTT
ATRNEFLSIRDMIVRVVEKLDVGLDRVRVSVVQYSDDAKQEFLLNEYSTKSEVRQAVRRL
QSKGGNRLNTGRALEFVSRNIFQRSAGSRVEEGVPQFLILVTGGKSSDDITQQADQLKRN
QVAPLAIGSRNADVDELRMISLKPELVYTVDNFRQLSRVEPQLLRSVETISSTDIRDYVP
SVPSVDIDITDVGKKDIVFLIDGSDMTGPDGVAHIRDFIRTIVRQLDVQPDKVRVALVQF
SDRVQTEFSLNSHNNKQAVISAVDRLRQMGGRSSLLANAINYVLENELKPTAGVRLSDAS
QYLVVLTGGRSAQPVSVSGPLLKNKKVNCIALGTGNADINQLKEIATTSQDVITIPAFPN
LPAMKERFIARLSETPKVILPAPIDPSVEQTPSKKADIVFLMDGSQNLGRTNFNAVREFI
MNLIDLFFNERDNLRIGIAQYATDVVDGFYLNTHRNRDDIIDAIGEIDYRGGFRINTGAA
IRHIQDVHFTKQKGSRIDEGVPQILMVVTGGPSSDNSKTAILGLKNKGVKVFAVGVGDIM
EELESLASSASTVARADTFQGLSELNEQILEALHDEITGTGTTCEQQVTRACDIEVLVGF
DVSGRNIFSTQTNLQSKMGAILQRIFKMASISCSGGQSPSVQVGMLALDSGSVPVQLDFT
ESADVLFENFKRLQTRGPFILNGKTITAYNDRFKVRQDNTIKIIIHLTDGLDAPYAEMKR
RVEELRMSGVNSFILVGLEGVQKFEEALLLEFGRGFRYTRPLRLNVMDLDYELLEELDNV
AERECCGVPCKCTGTRGDRGAVGLPGYKGSPGLPGSPGHPGDEGGPGERGHPGVNGTQGF
QGCPGPRGLKGSHGFSGEKGELGEIGLDGINGQEGQSGVAGPPGDRGSPGRRGPKGTKGQ
AGDVGERGLRGDPGTSGRDNDREGAKGDPGDAGQPGQPGENGRTGGPGDLGRNGLDGRRG
PPGPPGRPGAAGDQGQKGQPGVAGSRGPSGPIGIKGQKGEDGNPGPRGRGGAPGPIGDKG
RRGPLGRKGEPGEPGIKGDIGPEGPRGEPGLDGRDGAGIPGPKGKKGDAGFPGYPGAKGE
AGDPGTRGGPGPRGNQGQRGDSGNIGPPGQKGEVGYPGPYGAKGPRGPGVVQCDLVKKIR
DNCPCCYGKLECPLYPTELAFALDVSQNVDQTTFNNMRDTAARLVKDITIAESNCPRGAR
VALTLYNNEVITEVRFADAIKKRALVERIEGLQIPRSKKAPSLDTAMSFVAQNTFKRVRS
GFLMRKVAIFFVGHRINQRQIVSNAALRLHDAGIATLFLVKNEDTMLNRAVQVNNTELAQ
VMVLPGTGKAGYDAVFKKIMNCHVCLDACSPDSTCDYVPPSISRDRRSLTSDVDIDVAFL
IDSSESTYPSVFLEIKRYIAHTVEGLHVTSNPTSSLHHARVSVIQQAPYGFLQNKSASPI
QVDIGLTEHHSGQDIVQFLLEKTQQLEGGRALAAAIESTVEDVFERAPLQRPRRVLILFV
TGSVEDEEEQLIRVATEVKCRGYFLVIFGVGETLSPKDTQVLSRLASEPSDVFFKRVESI
SHFYNKHILNFGQLLPKYISFETSAEPSSSCKALQSDQPLKSPSASSQQQEKHQKHQESQ
QAVSERKHNDELHVSNVTSSSLKLRWTNSDPKLFVYFEVVVTRLRDHALVLRTNVSGTEI
SVDNLESAQAYHAVVTALTAEGQVVSTRKGIIRTRAAGHVSGAVRKPAPEKTKTANELAD
PCSLDYDAGLPCTDYQAKWFFDRNNGFCAQFWYGGCGGNENRFDTEALCLKNCMKSAPEP
QPQEQQAEQVEILPAPAALTAVDICQLPKDEGTCGKFVLKWHFDAASKNCIRFWYGGCGG
NQNRFDAYEQCVKACEKPAPVNQGILASMKT
NT seq
9456 nt
NT seq
+upstream
nt +downstream
nt
atgaggaggcatcggctgctgccgctctgcgtccttctgggcgtcctgtttgcaggactc
ctcccgaagctggacgctcaggacaactgtgcacgaggcttgggagccgatttgtacttt
ctggtggattcctcgtggagtatgggagagaagaactttgagcatgtcagacagtttctg
tacaccttgacacaatctctgcaccaagtcggcagagggaggtttaagtttgctctggtg
cagtacaacagcaggcccaaaaccgagttccacctcaacagctacccaacgacgcaggac
gtcctgggacacatcaaggccatgtcttatcgtggtgggggcacccggaccggcctgggt
ctggactacctgattcattcgcatttgaccacgtcttcgggcagccgtgcggctgacggg
gtggcccaggtggtggtggtgctgacagacgggcgctcgcaggacgacgtgtccgagccg
gctcaggtgctgcagatggcgggagtggagatgtttgcagtcggagttcaggacgcggtg
gactcagagctcagggagatggctagccagcctcacgagactcacgtgttcaatgtagac
tctttcctgaagttgcgggatataatccaagatttagtagtgagcgtttgcggtgcggtg
acctggtcggggggggatcctgtggccaatgaggccccggtggcaggaggagggacagca
caagattcagctgacctaatattcttaattgacggatcagaaaacgttggagcagccaac
ttcccctatgtgcgtgatttgattttaagagtcattgagcccctttcagtgggcagcgac
gcaattcgggttgccttggtccagtacagcagctacccagagataaagttcaatctaaat
agattttatgacaagtcacaagtcctgggagcagtgaagggcctgacctactcagggggc
gctgaatcgaacctgggggctgccatggaggaagtggccgagagtcttttgagcgaaaca
gctgggagcagggaactcgaggccgtaccccaggttttggtgataatcagtgctggacca
tccagtgatgatactggtgtcggtgaccgggcccttaaaagggcgaatgttatcacttta
ggagtgtcgattggtgatactgccgctgcaaatctggaagaggttgccacagatagacgt
tttgtccagagagcttctgatttcagaacacttgcagccactgctggtggacttgtttcc
actattactgacttggccatgggaaccattataatacagaactcgttcactgaagtggtg
gcagcagcacaacgagacatcattttcctgatcgacagtacgatgggtccggtaatccta
accaatgtggttaactacatcaagcagtttgtcaactccaggccaatcggtccagacgcg
atccaagtcggtgttgcccagtttagctccgcccagagagtggtgatggacctcaacacc
catgataccagggagtccttagccgctgcgttggacaacatcaaaccgagatcgggacag
accatcaacatgggagcagccttgaacttcgtacgggagaacatgttgaggcctgagaag
ggcagccgcatgagggaaggtgtgccacaggttgtgatgctgtggaccagtaaaaagtcc
agcgacggcgtgcagcaacccgccgaggccctgctgcgaagaggcgtgctgattatggcc
gcaggcttcaaaacggctaacgtggacgagctgaatcagattgcctcttctgaaagagtc
gtgttctcggcaaaggagttccgacaagtgatgcgaaaatcgagggaaatcacagacgca
ctctcgactctagctgggatggttgtgatcgaggagccaactgagccagtggtggaaatt
accacagtgcaaacccaaaaagtggtccgagacatcgtgttccttctggacggctcaagc
tacatcggaaacaccaacttcccctacgtgagagacttcatgatcaacctcatcaaccat
ctggatatacggccagaccgggtccaaatcggcctgattcagttcgcagagcagccaaga
gtggagttttacctgaacacgtacaacaacaaggacgatgttgtgaacaaaatctctcag
ctcaggctgactggaggctacgagctgaatataggagctgccatgaattacgctctggaa
aatatgtttgtgccaccagctgggtcgcgcggtgttaccactgcccagcaagtgctggtt
ctgatcacaggaggcccatcccaagatgacgctaaaattgtggctgacaaactggctttg
gcaggagttctgactttcactgtcacttctggacaagcagatgtggaagaaatgagaaaa
attgcctttgttcaagatttggcttaccatcaaccagaattctcagatttaccagctatg
gatgaagccgtcctgccaagtctgataacggtggttggcgatacacagacagttattacc
ggagatgaaagggacgttgctttcctgattgacggcacagacagcgttcgagcagagttc
cccttaatccgggatttcatcctcaaagtaattgaaccacttgacattgggccggacaag
gtgcgcgtctcagtggttcagcacagcgagaggccgactccaactttctacctcaaaacc
tatcaaaccaaagacgaggtgttgagagctgtgcggggtatgtccctggctgggggacgc
agtctgaacacaggagttgctctaagatacatgaaggacgtggccatgtctgaaagctac
ggcagcagatctgctaatgatgtccctcagtttctgatcgttctggctgcagacagatct
gcggataatgtgaaagaaccagctggcgaactaaagacggagggagttgtaccgtttggt
gttggtgtcaagaacgcagacaagaagcagatggaagaaattgcgcacaacccctccttt
gcattcaaggtgaaagaattcagtgaactcgaaaccataccgcaaaggctcaataactac
gtgagcctaccgaaggatgagcttatggtccttctacaggaagcggagtctcagggccct
aagaaggatattgttttcctcgttgatggatctgtcaatgttggacgggaattccccatc
atccaggagttcatccgcagggtggtggacagcctcaatgtgggcgaaaacaagatccgg
atcggtgtagtccagtatggcgactacgctcaggctgacatgtatttgaatagccacaca
acaaaagaaggcgttttgaacggcatcagggaattgaggcagagaggaggaacgcagcgt
aacttgggccaggccttgcaagttcttagacaggatattatgacaccaggacgaggaagc
agaaagcaagagggcgtgccacagtttgcaatcattgtgtccagtgggccttctacagat
aatataaatcgtgaagccatttccctcaaacaatctaaagttattcccttcagcattggc
accagaaatgttaacccaacagagctgaaagtaacctcatacgtgcccagttttgccttc
acagtggacgaccttcctggcttgtacacagtccaagaaactctaatcaacaaagtaacg
gaaatgtcagatgacgacattgcaaggttacgcccagagtacacaacttttacagcgatc
acaccaccacctgcaacaggagataagagggatgttgtttttctcattgacggcacaaca
gcaacacgtaatgagtttctatccatccgtgacatgatagttagagttgtggagaagttg
gatgtaggactagacagggtccgagtttcagtggtacagtacagtgatgacgcaaaacaa
gaattccttctgaatgagtactccaccaaaagcgaggtacggcaggccgtgagaagactt
cagagcaaaggtggaaatcgtcttaacacaggtcgcgctctcgagtttgtctccagaaac
atcttccagaggtctgcaggaagcagagttgaggaaggcgtgcctcagttcctaatccta
gttacaggtggaaaatcttcagatgacataacccaacaagcagaccagctcaagagaaat
caagttgcacctctcgccattggttcaaggaatgcagacgtagatgaactgagaatgatc
tccctgaagccagagctcgtatacactgtcgacaatttccgacaactttcaagagtggag
ccacagctgcttagatcagtcgaaacgatttccagcactgacatcagagattatgttcca
tccgtgccatccgtggacatcgacatcactgatgtaggtaaaaaggacatcgtcttcctt
attgatggctcagacatgacaggtcctgatggagttgctcatattagggacttcatccgc
accattgttcgacagctcgatgtgcagcctgataaagtgcgagtggctcttgttcagttt
tcagacagagtccaaacggagttctcacttaactcacacaacaacaagcaagccgttatc
tctgccgtggacagactccgtcagatgggtggacgctcctcactgctggctaatgccatt
aactacgtattagagaacgagttaaaaccaaccgctggcgttcgtctgtctgacgcctcc
cagtatcttgttgttctcacgggtggacgctccgcccaacccgtctccgtctctggacct
ctgctaaagaacaagaaagtgaactgcattgctcttggaactggaaatgctgacataaat
cagctaaaagaaattgccacaacctcacaagatgttattactattcctgcattcccaaac
ttgccagcaatgaaagaaaggtttattgccagacttagtgaaacgccgaaggtgatttta
ccagctcctatagatcccagtgtagaacaaactccatctaaaaaggctgacattgttttc
ctaatggacggatcgcagaacttgggtcgaaccaacttcaatgcagtcagagagttcata
atgaacctaatcgatctgttcttcaatgagcgggacaacctgcgtatcggcattgcccag
tacgccacagacgtggtcgacggcttttacctgaacacacacaggaacagggatgacatt
atagatgccattggtgaaatagattatagaggtggattcagaatcaacactggggcagcc
attcgccacattcaagacgttcattttacaaagcagaaaggcagcaggatcgatgaaggt
gtccctcagatcctcatggttgtgacaggagggccctcgtcagacaacagcaaaacggcc
atcctgggtctgaaaaacaagggcgtaaaggtgttcgctgttggagtgggggacattatg
gaggagctggaatcgctggcgagcagtgcttccactgttgcccgagcagacaccttccag
gggctttcagagctcaacgagcaaatcctggaggctctgcatgatgaaataacggggacg
gggacgacgtgtgagcaacaagtaactagggcctgcgacattgaggtgttggtgggcttc
gacgtgtctggccggaacatcttcagtacccagactaaccttcagagcaagatgggcgcc
attctgcagaggattttcaaaatggcatcgatcagttgctcaggtgggcagagtccctca
gtccaagtgggtatgctggccttggattctggctccgtgcccgtccagttggacttcaca
gaaagcgcagacgtgctgtttgagaacttcaaacgcctgcagactcggggtccgtttatc
ctcaatggcaagacgatcacagcttacaatgacaggttcaaagtcagacaggacaacacc
atcaagattataattcacctgaccgacggtctcgatgccccttacgctgaaatgaaaagg
cgagtcgaggagcttcgtatgtcaggagtgaacagcttcattctggttggactggaaggg
gtgcagaagtttgaggaggctttgctgttggagttcggccgtggcttcaggtacaccaga
ccgttaagactcaacgtcatggacctggactacgagcttcttgaggaactggacaacgta
gcggagagggagtgctgtggagtgccgtgcaaatgtaccggtaccagaggagacagagga
gctgtcggactgccaggatataagggtagtccgggactgccaggaagccctggacatcct
ggtgatgagggaggacctggagaaagaggacaccccggcgtgaacgggactcaaggtttc
cagggatgtcctggaccgagaggtctcaagggctcccatgggttctcaggagagaagggt
gaattaggagaaatcggactcgatggcatcaatggacaagagggtcaaagtggagtcgcc
gggccgccgggtgaccgaggaagtcctggcagaagaggtcctaaaggcaccaagggtcaa
gcaggagacgttggagaaagaggactcagaggagaccctggaacgagtgggcgagataac
gaccgagaaggagctaaaggagatcccggtgatgctggacagccgggtcagcccggtgag
aatggaaggacgggaggtcctggtgatcttggaagaaacggacttgatggcagaagaggt
ccgcctggaccacctggacgccccggagcagctggagatcaggggcagaagggccagcct
ggtgttgcaggatccagaggtccaagtggaccaatcggcataaaaggacagaaaggagaa
gacgggaaccccggaccgaggggtcgaggaggagccccaggtccaattggagataagggt
cgaagaggacctcttggacgaaagggcgagccaggagaaccagggatcaagggtgacatc
ggacccgaaggcccccgtggagagcctggtctggatggcagagatggggccggtattcca
ggacccaaagggaaaaagggggacgcaggtttcccaggataccccggagcgaagggagaa
gccggagatcctggcactcgaggcggacctggacccagaggaaaccagggacaacgaggt
gactctgggaatattggcccacctggacagaagggcgaggttggatatcctggaccttat
ggcgccaaaggaccaagaggaccgggcgttgtgcaatgtgacctggtcaagaagatcagg
gataactgcccttgctgttatgggaagctggagtgtcctctctaccccacggagctggcc
ttcgccctggacgtctctcagaacgtggaccaaaccaccttcaacaacatgcgggacacg
gccgcacgcctggtcaaagacatcaccatcgccgagagcaactgtccgcgaggcgcccgc
gtggccctgaccctctacaacaacgaggtgatcaccgaggtccggtttgccgacgccatt
aagaagcgcgccctggtggagcgcatcgagggcctgcagatcccgaggtccaaaaaggcc
ccaagcttggacacggccatgagcttcgtggcccagaacaccttcaagcgggtccgcagc
ggtttccttatgaggaaggtggccatcttcttcgtcggccatcggattaatcagaggcag
atcgtttccaacgcagcactccgtctccacgacgctggaatcgccaccttgtttttggtc
aaaaatgaggacacaatgctgaacagagcggtgcaggtcaacaacacagaactggcccag
gtgatggttctccccggcactggaaaggccgggtacgatgccgtcttcaagaagatcatg
aactgccacgtctgcctggacgcctgctctcctgactcgacgtgtgactacgtccctcca
tccatcagccgcgatcgcaggtcgctgacctctgacgtagacattgacgtggctttcctc
atcgacagctcggagtccacctacccgtccgtctttctggagatcaagagatacatcgct
cacaccgtggaaggccttcacgtgacgtcaaaccccacgtcgtccttgcaccacgctcga
gtgtccgtcatccagcaggcgccgtacggattcctccagaacaagtccgcctcccccatc
caggtggacatcggcctgacggagcaccactcgggtcaggacatcgtccagttcctgctg
gagaagacgcagcagttggagggcggccgagcgttagcggccgccatcgagtccacggtg
gaggacgtgttcgagagggcgccgctccaacgccccaggagggtgctgattctcttcgtg
acaggaagcgtcgaggacgaagaggagcagctgattcgtgtcgccacggaggtgaagtgc
cgaggatacttcctggtcatcttcggcgtgggagaaactctgagcccgaaggacactcag
gtcctgtcgcgcttggcgagcgagccttcagacgtcttcttcaagcgggtcgaaagcatt
tctcacttttataacaaacacatcctgaactttggccagctgttaccgaagtacatcagc
ttcgaaacgtcggcggagccgtccagcagctgcaaggcgctgcagagcgatcagccgctg
aagagtccgtcggcgtcctcccagcagcaggaaaaacatcagaaacatcaggaaagtcaa
caagccgtttctgaaagaaagcacaacgacgagctccacgtctcgaacgtcacctccagc
agcctgaagctgcggtggaccaactccgaccccaaactcttcgtctacttcgaagtggtc
gtgacccggctgcgggaccacgccctggttctgaggaccaatgtgtccggcaccgagatt
tctgtcgacaacctggagagcgctcaggcgtaccacgctgtggtgacggcgctcacggcg
gagggccaggttgtctccacgcgcaaagggatcatcaggaccagagcagccggtcacgtc
agtggtgccgtaagaaaaccggcgccggagaaaacgaaaaccgctaacgaacttgcagac
ccatgctctcttgactatgacgctggactgccgtgcacagactatcaggctaagtggttc
tttgacaggaacaatgggttctgtgcacagttctggtatggaggttgtggaggcaatgag
aataggttcgacacagaggccctgtgcttgaaaaactgcatgaagtcagctccggagcct
caaccgcaggagcagcaggctgaacaggtggagatcctcccggctcccgcggctctgaca
gccgtggacatctgtcagctgcccaaagacgaagggacgtgcggtaagtttgtcctgaag
tggcactttgacgccgccagcaagaactgcattcgcttctggtacggaggctgcggcgga
aaccagaaccgcttcgacgcgtacgagcagtgcgtgaaggcgtgtgaaaaaccagcaccg
gtcaaccaaggaatcctggcctcgatgaaaacatag
DBGET
integrated database retrieval system
