Kryptolebias marmoratus (mangrove rivulus): 108228415
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Entry
108228415 CDS
T05608
Name
(RefSeq) E3 ubiquitin-protein ligase Topors-like isoform X3
KO
K10631
E3 ubiquitin-protein ligase Topors [EC:
2.3.2.27
]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
kmr04121
]
108228415
03036 Chromosome and associated proteins [BR:
kmr03036
]
108228415
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
kmr03037
]
108228415
Enzymes [BR:
kmr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108228415
Ubiquitin system [BR:
kmr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108228415
UBL E3 ligases
108228415
Chromosome and associated proteins [BR:
kmr03036
]
Eukaryotic type
Centrosome formation proteins
Centriole proteins
108228415
Cilium and associated proteins [BR:
kmr03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
108228415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
zf-RING_UBOX
zf-rbx1
zf-RING_5
zf-C3HC4_4
PWI
Motif
Other DBs
NCBI-GeneID:
108228415
NCBI-ProteinID:
XP_024858993
LinkDB
All DBs
Position
LG7:481473..487138
Genome browser
AA seq
1336 aa
AA seq
DB search
MPPPARNSSRRRKRNPDNEERATGERLPAEVTAPTRMKLRVRRGDGAAASGGGGPVEETT
ERSREGSRSSSRRKNSNKTSASATAAAASSSSPPTTSASSVRAVMAAEEASPDSKCPICL
DRFNNLAYLDHCLHRFCFPCIQEWSHNKAECPLCKQPFASILHSVRAEDDFKEYTLQPPP
TNNSVAATVAMVAAMASAARSDHHMRLMLRRHRVAEGRETTTRRRRRERGARGRGSEERA
GGVWELYLDHPPLSFPPLSRHLSVSNVVAEDSEEAEELPAERGGADSAERGALLNELTGL
RGAAASLASNNRALRRLMTRLAARQRLQREGGTMQRLRDGQMLDFRRMLYRCGIRVRGIA
GVSGNTGQQRDITAESFHQSHSHLNRLRPWLRRELRVMYGSNSSLVDIVQNIIMARLALH
GLENTLNLEEDLRPFLQARTEHFLHELVSFARSPLNMDSYDLQAVYEPPPAAAMELDGFS
SSSEGSSVIAISEEEEVEERGGRSEGTVINDLNDIIQTGSSLSLSGWDDETPGPSYSTAE
PSCSLVPPLSLSPTPQEPANERGGDRPREEAEEECLIVGYKKPIAERTPELVQLSSDTEE
EEGEKKKKEEEPAEKTPPLPSPTPSSSYLPIIPPSTSGAFRAEQEAGQKDEEVGGWRSRS
WSGSSGRSRKSVCSLNLAAPERRRRDDTQRGRRRKKKNKKRGREEGQRRSGVFSNPNRSI
YPPMMRRRSPPLFDSSADSSLEFHCAQVSPISSPSCSSPSSPLCLSPPQTPPTPSRSPAE
HAHHAEKPGGKRKYKSRHLNSSTKDPSWRQSGGRPRERRKERRRRREKTRKEDQQENGGL
GEEGRKRSREDRSPSVEIIYEGTISSSATRPLGHKRRRKRHRRPRHSSPPVIITLDSDSS
HDGVTNRKLPSGSSSPLSSQQTIDFSDLPPLPLVHSAGVGGALDADIGELPAEILDRSSD
GSEAAGPSAGRIHISDNSDVDVENVEDDVSLLEDGDHQTAGEGGQTHADNVVPGEHRASP
SDRYLLEAILSDLNQISAAKQQLFQNLESGFSPTARIRAPDETKGGPQDPGCDSQSGGSS
APSLPPLDVPPLLKRASPVRSYNRNTPPPLKHKDAGSPQQTAMFPRCSSDADPVGVTNKH
AIPPIETLKSHLRNVLALRGELPSGNSPPPSEPHHNPGNASHSTDPAHRDSASRCDGIRT
RSPDCREPAVDLCPPSRSAGADCKTRLSPAGAAGVRPESPSSPLLSSCSASGGQADRRTA
AGFLPPADGRLNHTALPSSAVRHFHPSKARSEQPHPSDSAPQPPANATHFHRDVQILKDH
QKTFSSPSADSNMSSV
NT seq
4011 nt
NT seq
+upstream
nt +downstream
nt
atgccgcctccggcgcggaactcctcccggagaaggaaaagaaacccggataatgaggag
cgagccaccggggagcgtcttcctgcggaggtgacggcgcccacgcggatgaagctgcgc
gtgcggcggggtgatggtgcagcagcttcaggaggaggcggtccggtggaagaaaccaca
gaaaggagtcgagagggcagcaggagcagcagcaggaggaaaaacagcaacaaaacctca
gcatcagccacagctgctgccgcttcctcctcctcacctccaaccacctcagccagctcc
gtgcgagcagtgatggcggcggaggaggcgtcacccgactccaagtgtcctatctgtttg
gatcgcttcaacaacctggcgtacctggaccactgcctgcaccgcttctgcttcccctgc
atccaggagtggtcgcacaacaaggccgagtgtccgctctgcaagcagcccttcgcctcc
atcctgcactccgtccgcgccgaggacgacttcaaggagtacacgctgcagccgccgccc
accaacaacagtgtggccgccaccgtggccatggtggcggccatggcatcagcggctagg
agtgaccaccacatgaggctgatgctgaggaggcaccgggtggctgaaggcagggagacg
accacgaggaggcgcaggagggagaggggagcgagagggagggggtcggaggagagggca
ggaggggtgtgggagttgtacctcgatcatcctcctctgtctttcccgcctctttctcgc
cacctaagcgtctcaaacgttgtggcggaggacagcgaggaggcagaggagctgccggcg
gagaggggcggggctgactctgcagagcgcggggcgctgttgaacgagctgacgggcctc
agaggggcggcagcatctctggcctctaacaaccgggcgctgcgacggctgatgacccgc
ctggcggcgaggcagcggctgcagcgagaaggcgggaccatgcagcggctgagggacggg
cagatgctggatttccgccggatgctttaccgatgcggcatacgagtccgcggcattgca
ggcgtcagtggtaacacagggcaacagcgtgacatcacagcagagagtttccatcagagc
cactcccacctgaacaggctccgcccctggctgcggcgggagttgagggtgatgtacggc
tctaactcttctctcgtggacatcgttcagaacatcatcatggcgcggctcgccctccac
ggtctggagaacaccctgaacttagaagaagacctgcggccgttcctgcaggcgcgcacc
gagcacttcctgcacgagctggtgagcttcgcccgctcgccgctcaacatggacagctac
gacctgcaggctgtgtacgagcctccccccgccgctgccatggagctggacggcttcagc
agctcctccgaggggagctctgtcatcgccatatccgaggaggaggaggtggaggagagg
ggaggaagatccgagggaaccgtgatcaacgacctcaatgacatcatccagacaggaagc
agcctgagcctgtcagggtgggacgatgagacgccaggcccctcctactccactgcagaa
ccatcgtgttcacttgttccaccgctgtcattaagccccacccctcaggagccggccaac
gagcgaggaggagaccgaccgagggaggaggcggaggaggagtgtctcatcgttgggtac
aagaagccgatcgcagagcggactcctgagctggtgcagctgtcctccgacaccgaggaa
gaagagggagagaagaagaagaaggaggaggagccagctgaaaagactcctcctcttccc
tcccccactccttcctcctcttacctacccataatccctccctccacatcaggtgccttc
agagcagagcaggaggcgggacagaaagacgaggaggtgggggggtggcgctcacgttcg
tggtcaggaagttcgggccgaagcaggaagtctgtgtgctcgctcaacctggcggcgcct
gagcggcggcgacgagacgacacacagcgcggcaggaggaggaagaagaagaacaagaag
agggggcgggaggaggggcagaggaggagcggcgttttcagcaacccgaaccgctccatt
tacccccccatgatgcggcgccgctcaccccccctgttcgactccagcgccgactccagc
ctggagttccactgcgcccaggtctcccccatctcctccccctcctgctcatctccctcc
tcccccctctgcctctcccctccccagactccgccgacacccagccgctcccccgcggag
cacgcccaccacgcagagaagcccggcgggaagaggaagtacaagagccggcacctgaac
agcagcaccaaggacccgagctggaggcagagcggggggcggccgagggagaggaggaag
gagcggcggaggaggagggagaagacgaggaaggaggatcagcaggagaacgggggcctt
ggagaggagggcaggaagaggtccagggaggaccggagtcccagtgtggagatcatctac
gagggcaccatctcctccagcgccacccggcctctgggacacaaacggcgccggaaacgg
caccgcaggccgcggcacagcagccctccggtcatcatcaccctggacagcgacagcagc
catgacggcgtcaccaacaggaagctccccagcggcagcagcagccccctcagcagccag
cagaccatcgacttctctgaccttcctcctctcccattggtccactcggccggcgtgggc
ggggccttggacgcagacatcggggagcttccggcagagatcctggatcggagctctgac
gggtcggaggcggcaggaccgtcggcaggtcggatccacatcagcgacaacagtgacgtg
gatgtggaaaacgtggaggacgacgtgtcgctgctcgaagacggcgatcatcaaaccgcc
ggtgaaggcggtcagacccatgcagataacgtggttcctggagaacatcgagcgtctccg
tctgacagatatctactggaagccatcctcagtgacttgaaccagatctctgcagccaaa
cagcagctcttccagaacctggagtccggtttctcacctacagccaggatcagggctcct
gatgagaccaaaggtggtcctcaggatccaggttgtgactctcagagcggcgggagctcg
gctccttcgctgcctcctctggatgttcctcctctcctcaaacgggccagtccagtccgg
tcctacaacaggaacactccaccaccactcaaacacaaagacgccggaagtcctcagcag
accgccatgtttccccgctgctcctctgacgccgacccggtgggtgtcaccaacaaacac
gccatcccccccatagaaacgctgaagagccacctgaggaacgtgctggccctcagagga
gagctgccgtcagggaacagccctcctccttcagagccacatcacaatcctgggaacgcc
tcacattccaccgacccggcgcacagagactctgcctccaggtgtgacgggatcagaacc
aggagtccggactgccgggaacctgctgtagacctgtgtccacccagccgttctgctgga
gcggactgtaagacgaggctgtcccctgctggggctgctggggtcagacctgagagcccg
tcctcacccctcctgtcttcctgctcggcttcaggaggacaggcggacagaaggacagca
gctggcttcctgccgccggctgatggccggttaaaccacacggccttaccttcgtctgca
gtcagacacttccatccatccaaggcccgctctgagcagccccacccctctgactccgcc
ccccagccgcccgctaacgccacgcacttccacagagacgttcagatccttaaagaccat
cagaagacgttcagctcgccgtctgctgattccaacatgtcttccgtctga
DBGET
integrated database retrieval system
