Kryptolebias marmoratus (mangrove rivulus): 108228547
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Entry
108228547 CDS
T05608
Symbol
casc3
Name
(RefSeq) protein CASC3 isoform X1
KO
K14323
protein CASC3
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03013
Nucleocytoplasmic transport
kmr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108228547 (casc3)
03015 mRNA surveillance pathway
108228547 (casc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kmr03019
]
108228547 (casc3)
Messenger RNA biogenesis [BR:
kmr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108228547 (casc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
108228547
NCBI-ProteinID:
XP_037834698
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All DBs
Position
LG12:complement(819832..828375)
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AA seq
794 aa
AA seq
DB search
MADRRRRRRRASQDSEDDDESGSGSDSGRSGSPDPKSRIRDPEPVEAEVTRTEPKSDVES
ECESEDGAGEAVLSDYDSADPEENASHSEGGEDEEEGYSEEEPPAAAASEPKPSAADDPT
HEEQEEEEEEEEAAEEEKPEEEAGGPSKEEIKGEEKGNLAGERQSGDGQESTDDPETKAG
GKSGQQLDDDEDRKNPAYIPRKGLFFEHDVRGHAQEEERPKGRNRKLWKDEGRWEHDKFR
EEEQAPKSREELIAIYGYDIRNGGGGPGDRAYRQRRPRPSSSPNRDKRWRDGGGPRPVRS
WQNRGGAAPPSFLPPSSSSTAFPPLPPTQRSSNSSRPLPSRSRHPHQNQTHLPYSEYRSN
ESNAPQVHPRERPGSKAPLEPAGERGGASRGGRGPGGRGGSAVVIEDVSVSQGRAGEEDL
SPASATTAASPQPGGYQSPRRQQQEQRGGADRSASGPAASPSDPSSQSAATNREASPPTE
RPVERKSYSLARRTRSRPSDLGSKQASVEESASGGNTSSPSSGGGKSWTGGGDGTGQTPT
TAAAAAGGGGGGGGGGGGGGGAGLAELDQDVARLSLARQNWSQSPTSYMRSEMRGLPNAL
HMAGGPPQFSNIEEMGVSSNRAKRYSSQRQRAVPEPAPPLHLGVMEGHYYEPMSYQGPIY
THGDGAAPIPPQGMLVQPEMHIPHPGQSPQGLHPHQSGGPIANPALYGAPPVSLSPGQPQ
QLLPPPFYPPPGVMTFPYPTMYPNPQGQTQVTYGGVTYYDTMQQQAQPKPSPPRRTSQPV
TVKPPPPEVPFASE
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcggaggaggaggcgcgcgtctcaggacagcgaggacgacgacgag
tccggctcgggttcggacagcgggaggtcgggatctcctgacccaaagagtcgaatccgc
gatcccgaaccggtggaggcggaagtgacccggaccgaaccgaagagcgacgtggagtcc
gagtgtgagagtgaagatggggctggagaagctgtcctctcggactatgacagcgccgac
ccagaagagaacgcctctcactcagagggaggggaggatgaagaggagggttacagtgaa
gaagaacctccagcagcagcagccagtgagcccaaaccttcagctgctgacgacccgaca
cacgaggaacaggaggaggaggaggaggaggaggaggcagctgaagaggagaagcctgag
gaggaggcaggaggacccagtaaagaggagattaaaggggaggagaaaggaaacctcgca
ggagagaggcagagcggtgacggacaggagtccaccgacgatcctgagacgaaggcggga
ggaaaatcgggtcagcagctcgatgatgacgaggacaggaagaacccagcctacatcccc
aggaagggtctgttcttcgagcatgacgtccgcggccacgctcaggaggaggagaggccc
aaaggtcggaacaggaagctgtggaaggatgagggtcgttgggagcacgacaagttcaga
gaggaggagcaggcgccgaagagccgtgaggaactcatcgccatctacggttacgacatc
aggaatggaggcggcggccctggagaccgagcgtaccgacagagacggcccagacccagt
tcttctccaaacagggacaaacgatggagggacggaggaggaccgagaccagtccggtct
tggcagaaccgaggaggagcagctcctccttcatttctccctccctcctcttcatccact
gcctttcctcctcttcctcccactcagcggagcagcaactcctccagaccgctcccctcc
cgcagcagacacccccaccagaaccaaacacacctcccttattcggagtacaggagtaat
gaatcaaacgcacctcaggtccatcccagggagcgtcctggttctaaagctccactggag
cctgcaggagagaggggcggggccagcaggggagggcggggtcctggaggaagagggggg
tcagctgtggtcatcgaggatgtttcagtcagtcaggggagggcaggagaggaagatctg
agcccagcctctgcaactacagctgcctcacctcaaccaggggggtaccagtcacccaga
cggcagcagcaggaacaacggggcggcgccgacagatccgcatctggaccggctgcctcc
ccctctgacccctcctcacagtctgctgcaaccaatcgggaagcttctcctcccaccgag
cggcctgtggagcgtaagtcctactctctggcccgcaggactcgttcgaggccctcggac
ctgggcagcaagcaggcctctgtggaggagtcggcgtccggggggaacacctcctccccc
agcagcgggggagggaagagctggacaggagggggagacgggaccggtcagacaccgacg
acggcagcagcagcagcaggaggaggaggaggaggaggaggaggaggaggaggaggaggg
ggcgcaggactggcagagctggaccaggacgtggctcgactcagtctggcccggcagaac
tggagtcagagcccgacgtcgtacatgcgctcagagatgagaggccttccgaacgccctg
cacatggccggcggcccgcctcagttctccaacatagaggagatgggcgtcagctccaac
cgggccaaacgctactcgtcccagcgtcagagagctgttccagaaccagcgccgcccctg
cacctgggagtgatggagggacactactacgagcccatgtcgtaccagggaccaatctac
actcacggcgatggcgccgcccccatcccgccccaaggcatgctggtccagcctgagatg
cacatcccccatcctggtcagagtcctcaaggactccatccccaccaatcaggcggcccg
atcgctaaccccgccctctacggtgcgccgccagtctctctgtcgcctgggcaaccgcag
cagctgctgccgcctcctttttaccctccgcctggggtcatgaccttcccatatcccacc
atgtacccaaacccacagggtcagacccaggtgacctatggcggcgtcacgtactacgac
acgatgcagcagcaggctcagcccaaaccctcgcccccccgccggacgtcccagcctgtc
accgtcaaacccccccctccagaggttccctttgcctcagagtga
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