Kryptolebias marmoratus (mangrove rivulus): 108228601
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Entry
108228601 CDS
T05608
Symbol
wdr33
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33
KO
K15542
polyadenylation factor subunit 2
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108228601 (wdr33)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kmr03019
]
108228601 (wdr33)
Messenger RNA biogenesis [BR:
kmr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
108228601 (wdr33)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40
Beta-prop_WDR5
Beta-prop_IFT122_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WDR55
WD40_Gbeta
EIF3I
Beta-prop_IFT140_1st
Beta-prop_Aladin
Beta-prop_TEP1_2nd
ASA1
Beta-prop_WDR36-Utp21_2nd
ANAPC4_WD40
Beta-prop_WDR19_1st
DSE1_N
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_RIG_2nd
Beta-prop_EIPR1
CFAP251_N
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
eIF2A
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_NOL10_N
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
Beta-prop_WDR11_2nd
Beta-prop_DCAF4
Beta-prop_WDR41
Ge1_WD40
PEP5_VPS11_N
DUF8689
Motif
Other DBs
NCBI-GeneID:
108228601
NCBI-ProteinID:
XP_037830345
LinkDB
All DBs
Position
Unknown
AA seq
1051 aa
AA seq
DB search
MATDVGSPQRFFHMPRFQHQAPRQVFYKRPDIAQQQAMQQLTFDGKRMRKAVNRKTIDYN
PSVIRYLENRLWQRDHRDFRAIQPDAGCYNDLVPPLGMLNNPMNAVTTKFVRTSTNKVKC
PVFVIRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD
HGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERIL
RGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKWNLNG
NWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWH
TGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLL
PGMSEDGVEYDDVEPNSMAMIPGMGIPEQLKAAMEQEQSSKEAAPEVEMSIPGLDWGMDE
VMGKDAKKVPQKKVPYAKPIPAQFQQAWAENKVPMMAQSAELSKDRHLELKVDMKKKTQA
ELEQEMAALQYTNPQLLEQMKMNQMNSDGNMGPPQGPGSMPPFPGPGGPGGPGPSGPQGF
APSMPPQQMPGSMGPIMGPAGMQSSFMQPGQMGPPPHQGPPQGMMGPSDMQEPQRHPGPP
RNVGPQGPHGMGHRGMQGPPGGMMGPPPRGMGPRDPQGPPPQGGMMPPQGNMMGPQGQMQ
GGMMGPPPRTHGNMPNNYGMGNMQGPPGGMHGPPGGMQGPPGNMQGPPYMQHQSQNSGPM
MHGMGPQGPNSKDPRGPPPNHHMGPPDRQGPGGPDKGSGSYWGENQQGRRGPQDFDGGQD
FHTRGEDGWRPGPGPGPGFQGGGHRGSHRGGGGNWGPDERFSGAEFRGRREDRFRGGGPS
RPGGRSYPDEYGGQEEGFDGVEEMGRGWDTGGRGRPQRGGGPPRGGHDGYRDDSSSPGGR
ERPSSLQGMDMASLPPRKRPWQDGPGTGGDPREREPAGADGGRLPQRDDGGYPPSGRGGR
GGWGPGGGPGPGSWRGGPPPRGAPRGGGRGR
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagacgtgggctcgccgcagcggttcttccacatgccgcgtttccaacaccag
gcgccacggcaggtgttctacaagaggccggacattgcccagcagcaggccatgcagcag
ctcaccttcgacgggaagcgcatgaggaaggccgtgaaccgcaagaccatcgactacaac
ccgtctgtcatcagataccttgagaaccgtctgtggcagcgggatcacagagacttcaga
gccatccagcctgacgccggctgttacaacgatctcgttcctccgctcggcatgctgaac
aacccaatgaacgccgtcaccacaaagttcgtcagaacctccaccaacaaagtcaagtgt
cctgtgttcgtcatcaggtggactcctgaagggcgccggctggtgaccggagcctccagc
ggagagttcaccctctggaatggactcacctttaactttgagaccatactgcaggcccat
gacagtccggtccgggccatgacctggtctcataacgacatgtggatgctgacggcggac
cacggcggctacgtgaagtactggcagtccaacatgaacaacgtgaagatgttccaggct
cacaaggaggccattagagaagccagcttttctccaactgataacaagtttgccacgtgc
tcagatgatggtaccgtccggatctgggacttcctgcgttgccacgaggagaggatcctc
agaggtcacggcgccgacgtgaagtgtgtcgactggcatccaaccaaaggtctggtggtg
tcgggcagcaaagacagccagcagcccatcaagttctgggacccaaagacgggccagagc
ctggctacactccacgcccacaagaacaccgtgatggaggtgaagtggaacctgaatggt
aactggctgctgacggcatcacgggaccacctgtgcaaactgttcgacatccggaacctg
aaggaggagctgcaggtgttcaggggacataagaaggaggccacagctgtcgcctggcat
cccgtccacgagggactgttcgccagcggaggctcagacggctcgctgctgttctggcac
accggtgtggagaaggaggtggggggcatggagatggcccatgaggggatgatctggagt
ctggcctggcacccgctgggtcacatcctgtgttctggttccaacgaccacaccagtaag
ttctggactaggaaccgacccggagacaagatgagggatcggtacaacctgaacctgcta
cctgggatgtcagaggatggcgtggagtacgacgacgtagaaccaaacagcatggccatg
attcccgggatgggaattcctgagcagctgaaggccgccatggagcaggaacagagcagt
aaagaagcagctccagaggtggagatgtccatccctggactggactggggcatggacgag
gtgatgggcaaggacgccaagaaggttcctcagaagaaagtcccgtacgccaaacccatc
ccagctcagttccagcaggcgtgggccgagaacaaagttcccatgatggctcagtctgcg
gagctgagcaaagaccgacacctggagctgaaggtggacatgaagaagaaaacacaggcg
gagctcgagcaggagatggcagcgctgcagtacaccaaccctcagctgctggagcagatg
aagatgaaccagatgaactccgacgggaacatggggcccccacagggaccgggctccatg
cctccattcccaggccccggaggtcccgggggacccgggccttctggaccgcagggattt
gctcccagcatgcctcctcagcagatgcccggcagcatggggcccatcatgggccctgca
gggatgcagtcgtctttcatgcagcctggacagatgggccccccgcctcatcagggcccc
cctcagggcatgatgggaccatcagacatgcaagaaccacagagacatcccggccctccg
agaaacgtgggtcctcagggccctcatggtatgggacacagaggaatgcagggcccccct
ggtgggatgatggggccccctcctcgaggaatgggtccaagagaccctcaaggaccccca
cctcagggaggaatgatgccacctcaaggaaacatgatggggcctcagggccaaatgcag
ggagggatgatggggcccccaccaaggacacacggcaacatgcctaacaattatgggatg
ggcaacatgcaggggccccctggagggatgcatgggccccctggtggaatgcagggaccc
ccaggtaacatgcaggggccaccatacatgcagcaccagagtcagaactcagggcccatg
atgcacgggatgggcccacaggggcccaacagcaaagaccctcgggggccaccgcccaac
caccacatgggtcctcctgaccgacagggtcctggaggtcctgacaagggttcaggttct
tactggggagagaaccagcaaggacggcggggcccacaagactttgacgggggacaggac
ttccatactcgaggagaggatggctggagaccaggaccaggacccggtccaggattccaa
ggtggaggtcacagaggaagtcacagagggggcggaggaaactggggccccgacgagcgc
ttcagtggggcggagttcagaggacggcgagaggacaggtttcgaggaggcgggcccagt
cgacctggagggcggagctaccctgatgagtatggaggccaggaagaaggttttgatggc
gtggaggaaatgggccgaggctgggacaccgggggtcgtgggaggccccagcgaggggga
ggtcctccgagaggaggtcatgacggttaccgggacgacagctcgtctccgggtggtcgt
gagcgtccttcgtctctgcagggtatggacatggcgtctctgcccccccggaagcgtcca
tggcaggacgggccgggaacaggaggagaccctcgagagcgcgagccggccggagccgac
ggaggtcgtcttcctcagagggatgatggcggttaccctccatctggtcgaggtgggcgg
ggcggctggggtcccggaggaggtccaggaccgggctcgtggcgaggaggacctccaccc
agaggagcaccgagaggtggtgggcggggccggtag
DBGET
integrated database retrieval system
