Kryptolebias marmoratus (mangrove rivulus): 108229452
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Entry
108229452 CDS
T05608
Symbol
dhx38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108229452 (dhx38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
kmr03041
]
108229452 (dhx38)
Enzymes [BR:
kmr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108229452 (dhx38)
Spliceosome [BR:
kmr03041
]
Complex C
Other components
Step II factors
108229452 (dhx38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
T2SSE
nSTAND3
Microtub_bd
Flavi_DEAD
AAA_16
AAA_30
PhoH
Motif
Other DBs
NCBI-GeneID:
108229452
NCBI-ProteinID:
XP_017260613
UniProt:
A0A3Q3ACP3
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All DBs
Position
LG15:7941132..7957164
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AA seq
1253 aa
AA seq
DB search
MDDDVSMHRLEGTDPTAEVGGLIVKKKSAAAEPHVFRAPTPRTSLLGLDLLAAQKRKERE
TKEQEDSNGDEKNRKKSKVSSYKDWEESKSDSGSDEEDNDENTCVKKERKYRVTGSETPS
NPGGVSEEFRRRHQQREKERREQGVYASSKEDKNRDKDRSRDKSRDHRSERDERDSRHNR
GSSSRSERWERSERSERSQRDGWSERISRGSRRDEPSTPQNRPKDSFTPSRSNWEEDDSG
YASTRHSQWESPSPAPSHRESDRSERSHRSGRESERRDRSVRGRYSDDTPLPTPSYKYNE
WANDRKHLGSTPRLSQGKAKREDGEGGFMFDDEDEKEQWEEDQKQADRDWYMMDEGYDEF
HNPFTSTSDDYVKKREQILQKQTQKRISAQKRQINEDNERWETNRMLTSGVVQRLEVDED
FEEDNAAKVHLLVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDMAIISRKGSQLVRKHRE
QKERKKAQHKHWELAGTKLGDIMGIKKTEDEEPSGKVVGEDGKVDYRADQKFAEHMKEKS
EASSEFAKKKSILEQRQYLPIFAVRQQLLNIIRDNSIVIVVGETGSGKTTQLTQYLHEDG
YTRYGMVGCTQPRRVAAMSVAKRVSEEIGTNLGEEVGYAIRFEDCTSEKTLIKYMTDGIL
LRESLRESDLDHYSAVIMDEAHERSLNTDVLFGLLREVVSRRTDLKLIVTSATMDSDKFA
GFFGNVPIFHIPGRTFPVDVLFSKTPQEDYVEAAVKQALQIHLSGMAGDILIFMPGQEDI
EVTSDQIVERLEDLENAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLT
VDGIMFVVDSGYCKLKVFNPRIGMDALQVYPISQANANQRSGRAGRTGPGQCYRLYTQSA
YKNEMLTTTIPEIQRTNLANVVLLLKSLGVQDLLLFHFMDPPPEDNMLNSMYQLWILGAL
DNTGALTPTGRLMVEFPLDPALSKMLIVSCDMGCSADILIIVSMLSVPAIFYRPKGREEE
SDQVREKFSVPESDHLTYLNVYMQWKNNNYSSIWCNDHFIHTKAMRKVREVRSQLKDIMV
QQKMNLVSCGSDWDIIRKCICAAYFHQAAKLKGIGEYVNVRTGMPCHLHPTSSLFGMGYT
PDYIIYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSIKHAGKSRQENRRRAKEEINNME
QEMVLAEEQLRARREEQEKKNNANSVRAVKICTPGRREEAPMTPRRTPARFGL
NT seq
3762 nt
NT seq
+upstream
nt +downstream
nt
atggatgatgatgtgtccatgcataggctggaagggactgatccaactgctgaagttggt
ggtttgatagtaaagaaaaagagtgctgctgcagagccccatgtttttcgggcacccaca
ccacgcacatctttgctgggcctggatctgctggctgctcagaagaggaaggagcgtgag
actaaggaacaggaagattctaatggtgatgagaaaaatagaaagaagtcaaaggtttcc
tcctacaaggactgggaggaaagtaaaagtgactccgggtctgatgaagaggacaatgat
gagaatacatgtgtaaagaaagagaggaagtatcgtgtgactgggtctgagacgccctct
aacccagggggggtcagtgaagagttccgacgcagacatcagcagagggagaaagagaga
cgtgagcaaggagtctacgcctcctccaaggaggacaagaacagagacaaagacaggagc
agggataagagcagagatcaccggagtgaaagagatgagcgagacagcagacataatcgt
ggcagtagcagccggtcagagcgttgggagcgcagtgagaggagtgaacgctcacagaga
gatggctggtccgaacgcatcagcaggggtagtaggagagatgaaccctcaacaccacag
aatcgtcccaaagactcctttacaccatcccgctctaactgggaggaagatgatagcggt
tatgccagtacaaggcattctcaatgggagtctccatctccagctccatctcacagagag
tcagatcgctcagagagaagccatcgctctggccgagaaagcgagaggagagacaggtca
gtcaggggtcggtactctgatgacacgcccctgcctaccccatcctacaagtacaacgag
tgggccaatgatagaaagcatttagggtccacgcctcgtttatcacaaggaaaagctaaa
agagaagatggtgaaggaggatttatgtttgacgatgaagatgagaaagaacagtgggag
gaggaccagaaacaagctgacagagattggtacatgatggatgaaggctacgatgagttc
cacaaccctttcacttctacttctgatgattatgtgaagaagagagagcagattcttcaa
aagcagactcagaaaagaatatctgcacagaagcgacagatcaatgaggataacgagcgg
tgggagaccaatcgcatgttgaccagtggtgtggtgcagaggttggaggtggatgaagac
tttgaagaagacaatgcagctaaggttcacctgctagtccacaatctggttcctcccttc
ctggatggaagaatagtcttcactaagcaacctgagcctgtcatccctgtgaaagatgcc
acctccgacatggccatcatctctcgaaagggcagccagcttgtccgtaaacatcgtgag
cagaaggaacgcaagaaggcacagcacaaacactgggaactggcaggtaccaagctgggt
gatattatgggaataaagaagacagaagatgaagaaccaagcggcaaagtggtgggtgag
gacggtaaagtagactacagagcagatcaaaaatttgcagagcacatgaaagagaagagt
gaggccagcagtgagtttgccaagaagaagagtattctggagcagagacagtacctgccc
atctttgctgtcaggcaacaacttctcaatattataagggacaacagcatagtcattgtt
gttggggagacaggaagtggtaagaccacccagctgacccagtatctgcatgaagatggt
tacactcgttatggcatggtgggttgtactcagccccgaagagtggcagctatgagtgtg
gccaagagagtcagcgaggagattggcaccaacctcggagaggaggttggatatgcaatt
cgttttgaggactgcacttctgagaaaactctgataaagtacatgacagatggaattctg
ctcagggagtctctgagggagtcagatttggaccactacagtgctgttattatggatgag
gctcatgaacgctctcttaatactgatgtgctgtttgggctgctacgtgaggttgtatct
cgacgcactgacttgaagctcattgtcacctctgccactatggactcagacaaatttgct
ggattttttggcaacgtaccaatattccatattccaggaagaacgtttccagtcgatgtg
ttgttcagcaagacgcctcaggaggactacgtggaggctgcagtgaagcaagccctccag
atccacctcagtgggatggcaggagacatcctcatcttcatgcctgggcaggaggatatt
gaggtgacatcggatcagattgtggaacgtttggaagatttggaaaatgctcctgctctg
gctgtgctgcccatttactcgcaacttccatctgacctccaagcaaaaatcttccagaag
gctccagatggtgtgagaaaatgcatcgttgctacaaacatcgctgagacatcccttact
gtggatggaattatgtttgttgtggattcaggatattgcaaactgaaggttttcaatcct
cgcataggtatggatgctctccaggtttatccaatcagtcaagctaatgccaaccagcgt
tcaggtcgagcaggacgtacagggccagggcagtgttacaggctttacactcagagtgcc
tataagaatgagatgctgaccaccaccataccagagatccaaaggactaacctggccaat
gtagttctgctcctgaagtctctgggcgttcaggacttacttctttttcatttcatggat
ccgccacctgaggacaacatgcttaactcaatgtaccaactctggattttaggagctctg
gacaacacaggtgctttgactccaactgggcgtctgatggtggagtttccccttgaccct
gccctctcaaagatgcttatagtgtcctgcgacatgggctgcagtgcagacatcctcatt
atcgtctctatgttgtctgtgccagccatcttctacagacctaagggacgtgaggaggag
agtgaccaggtgagggagaagttctcagtccctgagagcgaccacctcacttacctgaat
gtctacatgcagtggaagaacaacaattactccagcatctggtgcaatgaccactttatc
cacaccaaagccatgcgcaaggtgcgtgaggtgcgatcccagttaaaggacatcatggtg
cagcagaagatgaatcttgtttcctgtggctcagactgggacatcatcagaaagtgcatc
tgtgctgcttacttccaccaggcggccaagctcaagggcattggagaatacgtgaatgtg
aggacaggcatgccatgtcacctccaccctactagctccctgtttggtatgggctacacc
cccgactacattatttaccacgagcttgtcatgaccacaaaggagtacatgcagtgtgtt
actgctgtggatggagagtggttggcagaacttgggcccatgttctacagcatcaaacat
gcaggaaaaagcagacaggagaaccgtcgtcgggccaaggaggagatcaacaacatggag
caggaaatggtcctggctgaggagcagctgcgagcacgtcgagaagagcaggagaaaaag
aacaatgccaacagtgtcagggcagtaaaaatctgtaccccaggaagaagagaggaggcc
cccatgacacccagacgtaccccggcccgttttggactataa
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integrated database retrieval system
