Kryptolebias marmoratus (mangrove rivulus): 108229968
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Entry
108229968 CDS
T05608
Symbol
smarca5
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 isoform X1
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108229968 (smarca5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kmr03021
]
108229968 (smarca5)
03036 Chromosome and associated proteins [BR:
kmr03036
]
108229968 (smarca5)
Transcription machinery [BR:
kmr03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
108229968 (smarca5)
Chromosome and associated proteins [BR:
kmr03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
108229968 (smarca5)
RSF complex
108229968 (smarca5)
WICH complex
108229968 (smarca5)
B-WICH complex
108229968 (smarca5)
NORC complex
108229968 (smarca5)
BRF complex
108229968 (smarca5)
NuRF complex (fruit fly)
108229968 (smarca5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
DEAD
HDA2-3
Myb_DNA-binding
DBINO
AAA_14
Motif
Other DBs
NCBI-GeneID:
108229968
NCBI-ProteinID:
XP_017261193
LinkDB
All DBs
Position
LG3:13794665..13802281
Genome browser
AA seq
1065 aa
AA seq
DB search
MSESENCVEQREEPTELEEAGGAEEKSDSSDGGKESSSDTGADGQDASSSSSTKTKESTP
GYEEKVQTDRTNRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQNLLSV
GDNRHRRTEQEEDEELLNESTKTTNVCTRFDESPSYVKTGKMRDYQIRGLNWLISLYENG
INGILADEMGLGKTLQTIALLGYMKHYRNIPGPHMVLVPKSTLYNWMNEFKRWVPSLRAI
CLIGDRDQRTALIRDVLLPGEWDVCVTSYEMLIIEKAVFKKFNWRYLVIDEAHRIKNEKS
KLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSEDFDSWFDTNNCLGDQ
KLVERLHTVLRPFLLRRIKADVEKTLLPKKEIKIYVGLSKMQREWYTKILMKDIDILNSA
GKMDKMRLLNVLMQLRKCCNHPYLFDGAEPGPPYTTDLHLVVNSGKMVVLDKLLPKMKAQ
GSRVLIFSQMTRVLDILEDYCMWKNYEYCRLDGQTPHEERQISINAYNEPDSTKFIFMLS
TRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQQKQVRVFRFITENTVEERIV
ERAEMKLRLDSIVIQQGRLVDPSANKIGKDEMLSIIRHGATHVFASKESEITDDDIDAIL
ERGERKTMEMKEKLSSLGESSLRNFTMDTENTSVYTFEGEDYREKKKVEVPPSSCLLCSW
QTSQKLRYLWLFFPSSQVITNWIEPPKRERKANYAVDAYFREALRVSEPKAPKAPRPPKQ
PNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNPDIPNSAQVQKEEQAKIDEAEALTE
EELEEKENLLQQGFTIWSKRDFNQFIKANEKWGRDDIENIAREVEGKTPEEVMEYSAVFW
ERCNELQDIEKIMAQIERGEARIQRRISIKKALDSKIGRYKAPFHQLRISYGTNKGKNYT
EEEDRFLICMLHKLGFDKESVYDELRQCIRNSPQFRFDWFLKSRTAMELQRRCNTLITLI
ERENMELEEREKAEKKKRGPKTASAQKRKPEGTPDGRGRRKKLKL
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagagcgaaaactgcgtggagcagcgggaagagccgactgaacttgaagaagcc
gggggagcggaggaaaagtcagactcttcagatggtggaaaagagtcgtcctcagatacc
ggggccgatggtcaagatgcatcctcctcatcgtcaacaaagactaaagaatctactcca
ggctatgaggagaaagtgcaaacagaccggaccaacagatttgaatacctgctgaagcaa
accgagctgttcgctcatttcatccaaccggctgcgcagaagacccccacctcccctctg
aagatgaaaccaggacgccctcggatcaagaaggacgagaaacagaacctgctgtctgtc
ggagacaaccgccatcgccgcacagagcaagaggaggatgaagagcttcttaacgagagc
acaaagaccaccaacgtgtgcactcgcttcgacgaatctccttcctatgtaaaaacagga
aagatgagggactatcagatccgcggtctgaactggctcatttctttgtatgagaatgga
atcaatggcatcctcgccgatgagatgggactgggaaagacccttcagacgatcgccctg
ctgggttacatgaaacactacagaaatatccccggccctcacatggtgctggtccccaag
tccaccctctacaactggatgaacgaattcaagcgatgggtgccctctctacgagcaatt
tgtctgatcggagacagagatcagaggactgccctgatcagagacgtcttgctgccaggg
gagtgggacgtctgcgtcacctcctacgaaatgctcatcattgaaaaagccgtgttcaag
aagttcaactggagatacctggtcatcgacgaagcccacaggatcaagaatgagaagtca
aagctttcagaaattgtgcgcgagtttaaaaccaccaatcggctgcttttgaccggaacg
cccctccagaacaacctgcacgagctctgggctctgctcaacttcctgctgcccgatgtc
ttcaattcatcagaggatttcgattcgtggtttgacacaaacaactgcttgggtgatcag
aagttggttgaacgtcttcacactgtgctgcgtcccttcctgctccgtcgtatcaaagca
gacgtggagaaaaccttgttgcccaaaaaagagatcaagatatatgtgggtctgagtaag
atgcagcgagagtggtacacaaagattctcatgaaggacatcgacattctgaactctgcg
ggcaaaatggacaagatgcgtctgctgaacgtcctcatgcagctcaggaagtgctgcaac
cacccgtacctgtttgacggggccgagccgggccccccttacaccaccgacctgcacctg
gtggtgaacagtgggaagatggtggtgctggacaagctactgcctaagatgaaggcgcag
gggtcccgtgtgctcatcttcagtcagatgaccagggtgctggacatcttggaggactac
tgcatgtggaagaactacgagtactgtcgcctggacggacagacgccgcacgaagagaga
cagatctccatcaacgcttacaatgaaccagacagcacgaagttcatcttcatgttgagc
accagggccggtgggttggggattaacctggccacagccgatgtcgtcatcctctacgac
tctgactggaaccctcaggtggacttgcaggccatggaccgagctcacaggatcggtcag
cagaagcaggtgcgcgttttccgcttcatcacagaaaacacggtggaggagaggatcgtg
gagcgggccgagatgaagctacgcctggactctattgtcatccagcaaggaagacttgtg
gatccaagtgcaaacaaaataggcaaagatgagatgctgtccatcatccgccacggtgcg
acgcacgtgttcgcctccaaagagagcgagatcacagacgacgacatcgatgccattctg
gagcgcggcgagaggaagacgatggagatgaaggagaagctgtcgtctctgggtgagagc
tccctgagaaacttcaccatggacacggagaacaccagcgtgtacacgtttgagggagag
gactacagagagaagaaaaaggtggaagtgccgcccagcagctgtttgctctgtagctgg
caaacgtcccaaaaacttagatatttatggttgtttttcccttcctctcaggtcatcacc
aactggatcgagcctcctaagagagaacggaaagccaattatgccgtggatgcctatttc
agagaagctctgcgagtcagtgagcctaaagcacccaaggcgcctcgtccccccaagcag
ccaaatgtccaagacttccagttcttccctcctcgtctttttgagcttctggaaaaggaa
attctgtactacagaaagacaataggatacaaggttccccggaacccagacatccccaac
tcggctcaggtccagaaggaggagcaggccaagatcgacgaggctgaggctctcacagag
gaggagctggaggagaaggagaaccttctgcaacaggggtttactatttggagcaaacgt
gacttcaaccagttcattaaagccaatgagaaatgggggagggatgatattgagaacatt
gccagagaagttgaggggaaaacccctgaagaagtcatggaatattccgccgtattctgg
gagcgctgcaatgagttgcaggatattgaaaagatcatggcccagatagaaagaggagaa
gccaggatccagagaagaatcagcatcaagaaggcgctggactcaaagattggacgctac
aaggctcccttccatcagctccggatctcttacggcaccaacaaaggcaagaactacaca
gaggaggaggaccgcttcctcatctgcatgctgcacaagctgggcttcgacaaggagagc
gtgtacgacgagctccgtcagtgcatccgcaactcccctcagttccgcttcgactggttc
ctcaaatccaggactgccatggagctgcagaggcgatgcaacactctgatcacgctgata
gagagagagaacatggagctggaggagagagagaaggcagagaagaagaaacgaggacca
aaaactgcctcagcgcagaaacgtaaaccagagggaacccccgatggccgaggacgcagg
aaaaagctgaaattgtga
DBGET
integrated database retrieval system
