Kryptolebias marmoratus (mangrove rivulus): 108230221
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Entry
108230221 CDS
T05608
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
kmr03009
]
108230221 (ighmbp2)
03012 Translation factors [BR:
kmr03012
]
108230221 (ighmbp2)
Enzymes [BR:
kmr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
108230221 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
108230221 (ighmbp2)
Ribosome biogenesis [BR:
kmr03009
]
Eukaryotic type
Other ribosome biogenesis factors
108230221 (ighmbp2)
Translation factors [BR:
kmr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
108230221 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
Viral_helicase1
DEAD
ResIII
nSTAND3
UvrD-helicase
Helicase_RecD
AAA_16
IstB_IS21
AAA_22
PhoH
DnaB_C
AAA_28
Flavi_DEAD
SLFN-g3_helicase
AAA
Zot
ABC_tran
AAA_25
SRP54
AAA_31
T2SSE
ATPase
SpoIIAA-like
AAA_5
Motif
Other DBs
NCBI-GeneID:
108230221
NCBI-ProteinID:
XP_017261749
UniProt:
A0A3Q3BDH5
LinkDB
All DBs
Position
LG11:13082149..13088871
Genome browser
AA seq
978 aa
AA seq
DB search
MAVEKFVSKTLELLQEEREAEIQETRIWQENISLKELQNKGICLLKLQVGSQSTGLYGRT
VVVLEPRKHLGFSSLPSNSFGPGDIVGLYDSSGCSAASQICTGIVTRVGQASVSVAFDDL
KDGVGFDRDGFYNLLKLANDVTYKRMKHALNALNGYSNGPAGNLINVLFGDTQPSSHSQP
NEVEFFNSDLDESQKEAVSFALSQRELAVIHGPPGTGKTTTVVEIILQALKQGQKVLCCA
PSNVAVDNLVERLACCKAKVLRLGHPARLLESIQKHSLDAVLAQSDNANIIADIRKDIDK
EFMGMRKMPDKGERVNFKREIGELRKELKNREATAIAQILKSADVVLSTNTGACGDGPLK
FLPAEHFDWVVIDECAQALESSCWIALLRARKCILAGDYKQLPPTIKSQTAASKGLSLSL
MERLIQMYEDSVVRMLTVQYRMNSAIMEWASKEMYGGRLTAHSSVESHLLKDLPGVARVE
ETCTPLLLIDTAGCGLTEMEVVEEQSKGNQGEVDIVELHIKALTEAGVKAKDIAVIAPYN
LQVDLLRQKLSPRHPELEIKSVDGFQGREKEAVVLSLVRSNRKGEVGFLAEDRRINVAVT
RARRHIAVVCDTQTVQNHAFLKSLVGHMTEFGEVRTAFEYLQDVVPQNYSRGQKDAKGTS
AVAKQKVKDQPASKGKQKKPTGVGPVENTAGPQSHTKSCAASALREQQNISRYAEIREQV
ENFVKDLSQKDLQFPPSFNSHDRLLVHQISEELGLVHESRGEGSGRSITVSRPETAKPAE
EPTQEESQKEETASIPQSEPPCQPSLDLKSLHLELMKREQQRREETSQQKKEQKNVPSAQ
SQLTKKGKGKNKTKAGACDIAAAAAPEDDFDALISAVMKADGVCSFVKCKASVLTLGQLC
TFCNRQYCLSHHIPEVHGCGDKAKSHARMRISKEGVLYAGSGKKDKSVDPNKKAYLQRKL
DSKLKDMATQRKPKNKDS
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggaaaaatttgtgtcgaagactcttgagcttctccaagaagagcgggaggct
gaaatacaagaaaccaggatatggcaggagaatatttccttgaaggagcttcagaataaa
ggaatttgccttttgaagctgcaggtaggaagtcagtccaccggcctgtacggtcgcacg
gttgttgtcttggaaccaaggaagcatctcgggttttcatctcttccgagcaacagcttt
gggccaggtgatatagttggcttgtatgactcctccggatgctctgcggcctcacagata
tgcacggggatagtaacgagggtcggccaagcgtcggtgagcgtggccttcgacgacttg
aaggacggcgtcggttttgacagggacggtttttacaacctgttaaagttggccaacgac
gtcacttacaaacgaatgaaacatgccttaaatgcgttaaatggatacagcaatggacca
gctggcaatttaataaatgttctctttggagacacacagccgtcttctcactcacagcca
aacgaggttgaattctttaactcagacttggatgagtcccagaaagaagctgtatccttt
gctctgtcacagagagaactggctgtcattcatggacctccaggcaccggtaaaaccacc
actgtggttgagatcatcctgcaagcactaaaacaaggccaaaaggtcctctgctgtgcc
ccgtcaaatgttgctgtggataatttagtggaaaggttagcctgctgcaaagctaaagta
ttgaggctgggtcaccctgcccgactcctggaatccatccagaaacactcgctggacgcc
gtgctcgctcagagcgacaatgcaaacatcatcgctgacatccgtaaagatatcgacaaa
gaatttatggggatgaggaagatgccagacaaaggagagagggtaaactttaaacgtgag
ataggggagctgagaaaagagctaaaaaacagggaggcaacagccatcgcccagatcctg
aagagcgctgatgtggtgctgtcaaccaacaccggagcctgtggcgacggtcctctgaag
ttcctgccggcggagcattttgattgggtggtgattgacgagtgtgctcaggccctggag
agcagctgctggatcgccctgctcagagcgcgcaagtgcatcctggctggagactacaag
cagctacccccaaccatcaagtcacaaacggctgcatcaaaaggcttatcgctgagcctc
atggagagacttatccagatgtacgaagactcggtggtccgtatgctgacggttcagtac
cgcatgaacagcgccatcatggagtgggcctccaaagagatgtacggtggacgactaacc
gcgcacagctcggtggagagccatttactgaaagatctaccgggcgtcgctcgggtcgaa
gaaacctgcactccactcctcctgattgacacagcggggtgtgggctgactgaaatggag
gtcgtggaggagcagtccaaaggaaaccaaggtgaggtcgacattgttgagctgcacata
aaggccttgacggaagctggagttaaagctaaagatatcgctgtcatcgcaccgtataat
ctacaagtggatctcctgcgtcagaaactgtctccacggcacccagagctggagataaag
tccgtggatggatttcagggccgagagaaagaagctgtggtgttgtcgttagttcggtcc
aatagaaaaggtgaagttggctttctggcggaggacaggaggataaacgtcgccgtcact
cgcgcgcggcgccacatcgccgtggtctgcgacacgcagacggttcagaatcacgctttc
ctcaaatccctcgtcggccacatgactgaatttggcgaagtccgaaccgccttcgaatac
cttcaagacgtcgtgccgcagaattacagccgggggcagaaagacgcgaagggcacgtct
gccgtcgcgaaacagaaggtcaaagatcaacctgcgagtaaagggaaacagaaaaaacct
actggggtcggccctgtggaaaatactgccggtccacagagtcacactaagtcctgtgca
gcatcagcactgagagagcagcagaacatcagcagatacgctgaaatcagagagcaggtg
gagaactttgtgaaggacttaagtcagaaggatttacagttcccgccatcgtttaactcc
cacgaccggctgctggtccatcagatctctgaggagctggggctcgttcatgagagcaga
ggggagggcagcggcaggtctatcaccgtctccaggccagagacggccaaaccagctgag
gagccaacacaagaagaaagccaaaaggaagaaactgcctccattccgcaaagtgaaccg
ccatgtcagccgtcactggatctgaaaagtttacacttggagctaatgaagagagagcag
cagagaagggaggaaacttctcaacaaaaaaaggaacagaaaaatgttccttcagctcag
agccagctgacaaagaaggggaaaggaaagaacaaaacaaaggccggagcctgtgacatc
gctgccgccgctgctccagaggatgacttcgacgctctcatcagcgccgtcatgaaggct
gacggcgtttgcagttttgtcaagtgtaaagcgtctgtgttaacacttggacagctgtgc
actttctgcaacaggcagtattgtctcagtcatcatataccagaggttcacggctgtgga
gataaggccaagtcccacgctcggatgagaataagcaaagaaggtgttctgtatgctggt
agtgggaagaaagacaaatccgtggaccccaataagaaagcatatctgcaaagaaaactg
gactctaagctgaaagatatggcaacacaaaggaaaccgaagaacaaggacagttaa
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