Kryptolebias marmoratus (mangrove rivulus): 108230304
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Entry
108230304 CDS
T05608
Symbol
trpa1b
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1b
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
kmr04040
]
108230304 (trpa1b)
Ion channels [BR:
kmr04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
108230304 (trpa1b)
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GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Ion_trans
Ank_KRIT1
ANK_LRRK2
DUF5798
Motif
Other DBs
NCBI-GeneID:
108230304
NCBI-ProteinID:
XP_017261877
UniProt:
A0A3Q3F7P9
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Position
LG21:complement(17263569..17284539)
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AA seq
1118 aa
AA seq
DB search
MNFGRDVARQTSCYTYVIEDEDPALASLSAIELVEKGDLALLENLVRKSPEVLSEKDECG
ASPLHHAAAGGHVTLIQFISSVIDPLETNCCDDHGNAPLHWAVERNKAESCRTLLDLGAD
PNILNTALLSPLHLAVSLGHNSLVGLLLSYNTTDCNLEGDLGNTPLILACSINNCEALSI
LIKHGARLCQQNKLGHFAMHAAAFAGAKKAMEVILKAGEEHGHAAINHINYLDKSNSSPL
HLAVRGGNIESIRLCIATGAKIDQQQNDRCTPLHLACTQGAIEVVKLMLSTVDQVEDIIN
LTDGACQTPLHRATVFDHTELAEYLISLGADLNSTDCKGNTPLLLATSCGAWKTVALLLS
KGANVNLKDKCGCNFLHLAILQPKGLKNLPEEVLQHSSVKALLNCEDSEGCTPLHYACRL
GIHDSVKNMLGLSGQLGLACKSKDKKSALHFAAQYGRINTCHRLLETITDSRLLNEGDER
GLTPLHLASKGGHAKVVQLLLRKGALFHSDYKGWTCLHHAASEGYTQTMDILLSANMKLL
DKTDEDGNTALHIAARAGHVAAVRLMLLRGAEFILNKNQTSFLHEALQNGRKDVVNAVID
SERCDEALRLFVPGSSQRCPILDMIEFLPETCKHLLDRCVRESDDDHNSPNYHIEYNFRW
LQAPISSKKLTDTIYKIQPLAAVNAMVQYNRIELLNHPVCKKYLAMKWVAYGSKAHMLNM
FLYLLGLLPLTHLIVTLRPSTNSTATGEPNIIMVPTSFTTQSFFLSFCMVMVLVMNVYSI
AKEVVQISQQRWNYFKDYSNQCDWTSAIFSLLFIIPLMLNAEGSFHWQAGAMAVLYSWVG
FLLYLQRFEGVGIYVVMFGEIMKTLFRIVMLFLYLMLAFSLAFYALMLNRKEFKSLPLSV
IQTFVMMVGELNYQNNFLEAFLGNQLPFGILTYAIFVQFVLLMPILLVNLMIGLAVGDIA
EVQRNASLKRIAMQIDLHTALEDKLPYWLMKRVDKPSITIYPNRKCSRHFLQQFLSGEEE
KNEVWSRLQSKSQACTLIETELKKQKSRMKEMSTTLEKQHNLLKLIIQKMEISSEADEYD
GPVNVRGSLWPSLGQAKARGRTTSRWVPLIKAIESKRK
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcggcagagatgtggctcgacagaccagttgttacacgtacgtcatagaggac
gaagatccagccctggcaagtctaagtgcaattgagttggtggagaagggtgacctggct
ctcctggagaacctggtgaggaagagcccagaggttctcagtgagaaagatgaatgcgga
gcgagtccactccatcatgccgccgcagggggccatgtcaccctcattcaatttatcagc
tctgtgatcgacccgctggagacaaactgctgtgatgatcacggtaatgcgcccttgcat
tgggccgtggagaggaacaaggctgaaagctgcaggaccctgttggacctgggggctgac
ccaaacatcctcaacacggccctcctgtcccccttgcacctggctgtcagcctcggacac
aacagcctggtgggacttcttctgtcctacaacactacagattgcaacctagagggagac
cttggaaacaccccactgatactggcctgctccatcaacaactgcgaggctttgagcata
ttgattaaacatggggccaggctgtgccagcaaaacaagctcggccattttgccatgcac
gctgctgcctttgcaggcgcaaagaaagctatggaagtcattctgaaggcaggagaagaa
catggccacgctgcgataaaccacatcaactatttggacaagtccaacagcagccctctc
catctggctgtacgtggcgggaatatcgagtccatccgcctctgcatcgccactggagcc
aaaatagatcagcaacagaacgatcggtgcacacctcttcatttggcctgcactcaaggc
gctattgaggtggtcaaattgatgctctccactgttgatcaagtagaagatatcatcaat
ctaactgatggagcttgtcagacccctctacacagggctacagtatttgaccacaccgag
ctggcagagtacctcatttcattgggtgcagaccttaacagcactgattgtaaaggaaac
actcccttactgctggccaccagctgtggagcatggaaaactgtagctctgctgctgtca
aaaggagccaatgttaatctgaaagacaaatgtggttgtaacttccttcacctggccatt
ctgcagcccaaaggactgaaaaatctcccagaagaagtgctgcagcatagcagtgtgaag
gcactgctgaactgtgaggacagcgagggttgcaccccgctgcattacgcctgcagactg
ggtatccatgactcggtgaagaacatgctgggcctctcggggcagcttggccttgcttgc
aagtccaaggacaagaagtctgctctgcattttgctgctcagtatgggcgcatcaataca
tgccacaggttactggagactatcacagactcccgtctgctcaatgaaggtgatgaacgg
ggcctgacgccgctccatttggcatcaaaaggtggacacgccaaagtggttcagctgttg
ctgcgtaaaggagctctctttcacagtgattacaaggggtggacttgtcttcaccatgct
gcatctgaaggatacacgcaaactatggacatcttactgtcagccaatatgaagttactg
gataaaactgatgaggatgggaacactgcactccatatcgctgcaagagcgggccatgtg
gctgcagtcagactgatgctgctcagaggggcggagttcattctgaacaagaatcagacc
tcgttcctccacgaagctctgcagaatggaagaaaagatgtggtcaacgctgtgatcgac
agtgagagatgtgatgaggctttgaggctgtttgttcctggctccagtcagcgatgcccc
atactggacatgattgagtttctgcctgagacctgcaagcatctgctggaccgatgtgtg
agggagtctgatgatgaccacaacagcccaaactaccatattgaatacaatttcaggtgg
ctccaggctcccatatcatcaaagaagctaacagataccatctataagattcagccactt
gctgcagtcaacgcaatggtgcagtacaaccgaatcgagctcctcaaccacccagtctgc
aaaaagtatctggctatgaagtgggttgcttatgggagcaaggctcacatgctgaacatg
tttttgtacctgttagggttgttgcctctaactcacctgatagtaactctacggccttct
acaaacagcacagcgacaggcgaacctaatatcatcatggtgcccacatctttcacaacg
caaagtttcttcttgtccttctgcatggtgatggtcttggtcatgaacgtctattcaata
gcaaaagaagtggtgcagatatcacagcagcgctggaattacttcaaggattattccaac
cagtgtgactggacttcagccatcttctctcttctgttcatcattcccctcatgcttaac
gcagagggctctttccactggcaagcaggagcaatggcagttttatactcctgggtagga
tttctcctttatctccaaaggtttgaaggtgtgggcatctatgttgttatgtttggggag
atcatgaaaacactgttccggattgtgatgctgtttttgtacctgatgctggccttcagt
ttggcgttctatgcgctcatgctcaaccgtaaagagtttaaaagcttgccactctcggtg
atacaaacctttgtgatgatggtcggggagctgaactatcagaacaacttcctggaagct
tttctgggcaatcagcttcccttcggtatcctgacgtatgccatttttgtgcagtttgtt
cttctcatgccaatcttgttggtgaatctgatgattggtttggcagttggagacattgct
gaagtccaaagaaatgcctccctgaaacgaatagccatgcagattgatctgcatacagct
ctggaagataagctcccctactggcttatgaaacgagtcgacaaaccttcaatcaccatc
taccccaaccgcaagtgctccaggcacttcctgcaacagttcctctcaggtgaagaggaa
aaaaatgaagtgtggagccgtttgcagtccaagtcacaggcctgcacgttgatagagact
gagcttaaaaagcaaaagtccagaatgaaagagatgtcgaccactctggagaagcagcac
aacctcctgaagctcatcatccagaagatggagatctcctccgaggccgatgagtacgac
ggtccagtgaacgtcaggggcagcctgtggcccagcctgggccaggctaaagccaggggc
cggaccacgtctcgctgggtccctctcattaaggccatcgagtccaaacgcaaatga
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