Kryptolebias marmoratus (mangrove rivulus): 108231018
Help
Entry
108231018 CDS
T05608
Symbol
vcanb
Name
(RefSeq) brevican core protein
KO
K06794
neurocan core protein
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
kmr00535
]
108231018 (vcanb)
00536 Glycosaminoglycan binding proteins [BR:
kmr00536
]
108231018 (vcanb)
04091 Lectins [BR:
kmr04091
]
108231018 (vcanb)
Proteoglycans [BR:
kmr00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
108231018 (vcanb)
Glycosaminoglycan binding proteins [BR:
kmr00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
108231018 (vcanb)
Lectins [BR:
kmr04091
]
C-Type lectins
Group 1: Proteoglycan core proteins
108231018 (vcanb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
EGF
Sushi
V-set
hEGF
EGF_2
I-set
EGF_3
Ig_3
Izumo-Ig
EGF_CA
Motif
Other DBs
NCBI-GeneID:
108231018
NCBI-ProteinID:
XP_017263280
UniProt:
A0A3Q3A6R1
LinkDB
All DBs
Position
LG14:10746350..10782695
Genome browser
AA seq
1353 aa
AA seq
DB search
MIRYILIHLLWLVCFCSARPQPASSHMPVKVQKIRQAARSLASNVVLPCRFSIMSDSPSS
PTDTPTPAPGHGLSPDEQVRIKWVKVENWEKPEESRETVVVVSHHGMVKVGPRFMDRVSV
SSRPLSVGDASLTIMRVRASDAGLYRCEVAYGIEDTQDTIHLSVSGVVFHYRANSSRYSL
DFNTASEACRSVHASMATPDQLTAAFEDGFDQCDAGWLADKTVRYPITVPRPGCAGDMLH
RPGVRSYGIRDPAEKYDVYCFVDKLNGEVFYPPSISGKLTWQEAKEECEQHDAVLASPGH
LFAAWRAGLNRCDYGWLSDGSVRYPITVPMPQCGGGMLGVRTLYKYKNQTGYPNPMDKHG
AFCFKAKLPEPTTVSPQTSPLLKKPDISRDTPISFTPERAELQTRSPEPTPYSPTERPQA
ELTSPHTGTFYDDTIDYNDLDKLESMPNISHFSDLPPLARPHPQPVLPVDKDVSARPPGR
EEVTPETRLGGPPEITTGMKTSPLEAMLSPSSSPKIITPEAGLPSATIEVKDQTALVFKD
GVSPGTTLLIDDGKAVSVGEESSADKRLHIIVVSGSKVNESVDLVLDLLKQPMNGSTSFF
PDISGLMQVNGEAGLGSGKVEPLPSTDIHIPTAVSFVNGHHEMSYETAYPQEARGDHFET
AKPVKPKEEEVQDDATTYSPMFSISTTLSDTVIPGATPIYKDMETGTLWEGSANGTLLTP
ATSLSGVMTDETEVGGTEPLTFIPDTSSLETSTQRLMEDVDGSASGEVDASGQDVYQPDK
ARISTTLPPHYSPVHTQKPPPAAGMKVTGEAVVGQTADGVAETGSGAEQVPEEDASGGQG
GLVDPPVDVSVTLLPTHQITSEKQNRTTEIHILEPFTRHSITTSDERKVLDDATKLTSPT
SHTGSASQSEQSKVISSQSVDLPTPSISSPLKTFDQSSQPDPQRALSPDPSASALHTEQV
VDDDKIDKSVLVESLPKTPVEIGATEQPKTSTGLVPSEEDSTVDVKGLPCSINVCQNGGS
CYEKRGQSICVCAPGFIGQHCDTDVDECHSNPCLNGATCQDGVNSFTCLCLPSYTGELCE
QDTEVCGFGWHKFQSHCYKYFTHCRTWDAAEKECRLHGAHLVSILSQEEQIFVNRLGKDY
QWIGLNDKMFETDFRWTDGRPVQYNHWRPNQPDSFFHTGEDCVVMIWHEDGQWNDVPCNY
HLPFTCKKGTVSCGQPPVVQHTKVFGAKKDRHEINSLVRYQCKQGFIQRHTPIIRCQPNG
QWEEPKITCISPATYHNSLCRQNPNLGSEQQTSRHTQPTKSPEEHHENQELKPNYKNSMN
SVNSDIPQNPSGKLDWDSFKNTLNLRTHEHEQE
NT seq
4062 nt
NT seq
+upstream
nt +downstream
nt
atgataagatacatcctcatacacctgctctggcttgtgtgtttctgttcggctcgccct
caaccagcttcttctcacatgccggtgaaggtacagaagatcaggcaggcagcccggtct
ctggccagcaacgtggtgctgccctgccgcttctccattatgtcagattctcccagcagc
cccacagacactccaacacccgcgcctggtcacggtctgagtcccgatgagcaggtcagg
atcaagtgggtgaaggtggagaactgggagaagccggaggagtcgcgggagacggtggtg
gtggtgtctcatcatgggatggtgaaggtggggccgcggttcatggaccgggtgtctgta
tccagccgcccgctgtcggttggagacgcttctctgacgattatgagggtcagggcgagt
gacgcagggctgtaccgctgcgaggtggcgtacgggatagaggacacccaggacaccatc
cacctcagtgtctccggtgtggtgttccactacagagccaacagcagccggtactctttg
gacttcaacacagcctcagaggcgtgtcgctctgtgcacgcctccatggcgacacctgat
cagctgaccgctgctttcgaggacggcttcgaccagtgcgatgcaggttggctcgccgac
aagacagtcagatatccaatcactgttcctcgtccaggctgtgcaggtgatatgttacac
cgaccaggtgtgagatcgtatggcatccgtgaccctgcagagaaatatgacgtgtactgc
tttgtggataaactgaacggcgaggtcttctatcctccctccatcagtggtaaactcacc
tggcaggaggcgaaggaggagtgtgagcaacacgatgctgtgttggcgtcgcccggtcat
ctgtttgcggcctggagggcagggctgaaccgctgcgactatggctggctgtccgatggt
agtgtccggtaccccatcaccgtccccatgcctcagtgtggaggaggcatgctgggggtc
cgcacgctctacaagtacaaaaaccaaactggctaccccaacccaatggacaagcatggg
gcattctgcttcaaagctaaactaccagaaccaaccactgttagcccacagacaagtcct
cttttgaaaaaacctgacatctccagagacactccaatatctttcacccctgagagagct
gaacttcaaacccgatcaccagaacctaccccatattccccaacagagagaccacaagca
gagctcacttctcctcacactggcaccttttatgacgatactatagactataatgactta
gacaagttagaatctatgccaaatataagccacttttcagacctccctcctttagcaaga
ccccaccctcaacctgtactcccggttgacaaagatgtcagcgccagaccacctggaaga
gaagaagtgaccccagaaaccagactgggcgggcctccagagatcaccacgggtatgaaa
acctcaccactggaagcaatgttgagcccttcatcctctccaaagattatcacaccagag
gcaggcctcccatccgccaccatagaagtgaaggaccaaacggcactagttttcaaagat
ggagtctctcctggaactacgttgcttattgacgatgggaaggctgtgtctgtgggggaa
gagtcatcagccgacaaacgtctccacatcatagtggtcagtggatcaaaagtgaatgag
tcagtggaccttgtcctggatttgctgaaacagcctatgaatggctccacgtctttcttt
cccgacatcagtggcctcatgcaggtgaacggtgaagctggccttgggagtggaaaagtt
gagcccctcccatcaactgatatccacattcctacagcagttagctttgtcaacggacac
catgagatgagttatgagacagcctatccacaggaggctcgaggggatcattttgagacg
gccaaacctgtcaagccgaaggaggaggaagttcaagatgatgccaccacatactcaccc
atgttctcaatatccacaacgctatcagatacagtcattcctggtgctacccccatatat
aaggacatggagactggcactctatgggagggttctgcaaatggtactcttctgacccca
gctactagtctttcaggtgtgatgactgatgagacagaggttggagggacggagcctttg
acttttatcccagatacatcgtctctggaaacttccacacagagattgatggaagatgtt
gatggatctgcttctggagaagttgatgcctcagggcaagatgtttaccagccagataaa
gccagaataagcaccacactgccaccccactactcccctgttcacacccagaagcctcca
cctgcagcaggtatgaaagtcaccggggaggctgtagtgggacagactgcagatggagtt
gcagagactggctcaggtgcagagcaggtacctgaagaggatgcctctggaggacaaggt
ggtctagttgacccacctgtagatgtcagcgtcactcttttaccaactcaccaaatcaca
tcagaaaaacagaacagaaccacagaaatccacatacttgaacccttcacacgtcactcc
attactacctcagatgagaggaaagttttagatgatgctaccaagctgactagcccaacc
tctcacacaggttctgccagtcagtccgaacagtccaaggtaatctcctcgcagagtgtg
gatctgccaacaccttcaatctcttcaccccttaagacttttgaccagagctcccagcct
gaccctcagagggctctgagcccggatccttctgcctctgctcttcacacggagcaagtt
gtggatgatgacaaaatagacaaatctgttttggtggagtcattaccgaagaccccggtt
gaaattggggctacagagcaaccaaagaccagcactggtttagttccttccgaagaggac
agcactgtggatgtcaaaggtcttccgtgctcgatcaatgtgtgtcagaatggaggctcc
tgctatgaaaaaagaggccaaagcatttgcgtttgtgcacctggattcatcggacaacac
tgtgacacagatgtcgatgaatgccactctaatccgtgtctcaatggagccacctgtcag
gatggggtcaactccttcacctgcctctgcctgcccagttacacgggagagctctgcgaa
caagacacggaggtgtgtggatttggctggcacaagtttcagtctcactgctacaagtac
ttcacacactgtcggacctgggacgccgctgagaaggagtgtcggctccacggcgcccac
ctggtcagcatcctgtcccaggaggagcagatctttgtcaaccgtctgggcaaggactat
caatggattggcctgaacgacaagatgtttgagacagacttcaggtggactgatggcaga
ccagtgcaatataaccactggaggccaaaccagcctgacagcttcttccatactggagag
gactgcgtggtgatgatctggcatgaagatgggcagtggaacgacgtgccctgcaactac
cacctacccttcacctgcaaaaaagggacagtgtcctgtggccagccccctgtggtgcaa
catactaaggtatttggtgccaagaaggatcgccatgagatcaactccctggttcgctac
caatgtaaacaaggtttcatccagagacacacaccaatcatacgctgccagcccaacggc
caatgggaggagcccaaaatcacctgcattagccctgcaacataccacaactcgctttgc
cgtcaaaaccccaacctagggagtgagcagcaaaccagtcgccacacccagcccaccaag
agtcccgaggagcaccatgagaaccaagagctgaagccgaattacaagaattccatgaac
tctgtgaactctgacattccgcagaacccttcgggtaaattagattgggattcattcaaa
aatacgttgaacctgaggacccacgaacacgagcaggaatag
DBGET
integrated database retrieval system
