Kryptolebias marmoratus (mangrove rivulus): 108231055
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Entry
108231055 CDS
T05608
Symbol
nup54
Name
(RefSeq) nucleoporin p54 isoform X2
KO
K14308
nuclear pore complex protein Nup54
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108231055 (nup54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kmr03019
]
108231055 (nup54)
Messenger RNA biogenesis [BR:
kmr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108231055 (nup54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
Motif
Other DBs
NCBI-GeneID:
108231055
NCBI-ProteinID:
XP_017263372
UniProt:
A0A3Q3AKY3
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Position
LG14:13136498..13147642
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AA seq
623 aa
AA seq
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MAFSFGGATSNTAASTSGFPFGSFGAKTTAPTTFGFNPTATTTTASSGFGTLTAPGFGAA
TTTSAPATGFSFGSTNTGFGGLGAGNTTAGGFSFGGFGLNANPAAISFNAGCFGAATTAG
TVFNFGNSLASTGAASGFGTTTTSAPAPGSTFSFAAPSNTTGGLFGSTQNKGFGFSSGLG
AGTTTGASGFGAGLGATGLGGFGGFNIQSTQQQQGGLFGQQAQQQGQAQPTQLYQQVTAL
SAPTLLGDERDSILAKWNQLQAYWGTGKGYYSNNNQPVEFTQENPFCRFKAVGYSCIPVS
KDEDGLVVLMLNKKEADVRAQQQQLVESLHKVLGSNQTLTVNVEGVKSLPNDQTEVIIYT
VERSPNGTSKRIPASTLFTYLEQANIKVQLTQIGVAMSVTRTELSPAQLKQLLQNAPAGV
DPIIWEQAKVDNPEPERLIPVPMVGFKELLRRLQIQEQMTKQHQTRVDIISNDISELQKN
QATTVAKIAQYKRKLMDLSHRVLQVLIKQEIQRKSGYAIQVDEEHLRVQLDTIQSELNAP
TQFKGRLNELMSQIRMQNHFGAVRSEERYNVDADLLREIKQHLKQQQDGLSHLISVIKED
LEDIKLIEHGLSDSGHTRGGMLS
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcagttttggcggcgccacgagtaacacagcggcaagcacgtccgggtttcca
ttcggctcatttggggccaagacgacagcaccaacaacctttgggttcaacccgacagcc
accaccaccaccgcctcctcagggttcggcactttaacagctcctggttttggggcagcc
accaccacctctgcaccagccactgggtttagttttggctccaccaacactggatttggg
gggcttggagctggaaacaccacggctggtgggtttagttttggggggtttggtttaaat
gccaacccagcagcaatcagctttaatgcagggtgctttggtgcagcaaccactgctggc
actgttttcaattttggtaatagcctggctagcacaggagcagctagtggttttgggaca
actacaacaagtgctccagcacccgggtccacattcagcttcgctgccccctctaatacg
acaggaggtctgtttggttccacacagaacaaagggtttgggttttcatcgggccttgga
gcgggtaccaccacaggagcgtcaggctttggagctggattaggagcaactggccttggt
gggtttggaggttttaacatccagtcgacacaacagcagcaaggaggcttgttcggccag
caggcccagcagcagggtcaggctcagcccacccagctttaccagcaggtcaccgctctg
tcagccccgaccctgctgggagatgaacgcgactccatacttgccaagtggaaccagctg
caggcctactggggcacggggaagggctactatagcaacaataaccagcctgtggagttc
actcaggagaacccgttttgcaggttcaaggctgtgggatatagctgcatcccagtaagt
aaggatgaagatggtttagtggtcttgatgctcaataagaaagaagcagatgtgagagct
cagcagcagcagctggttgagtctcttcacaaagtcctgggaagcaaccagactctgact
gtgaatgtggagggtgtcaaatccctcccgaatgaccagacagaggtaatcatttacacg
gtggagcgttcccctaatggcacctccaagaggatcccagcttccaccctcttcacctac
ctggagcaggccaacattaaggttcagctcacgcagatcggagtggccatgtcagtcaca
cgcacagagctctccccagctcagctcaaacagctgctgcagaacgctcctgcaggagtg
gatccaatcatatgggagcaggctaaggtggacaatcctgaacctgagaggttgatcccc
gtgcctatggttgggtttaaggagctgctccgcagattgcagatccaggaacagatgact
aaacaacatcagactagagtggatatcatctcgaacgacatcagtgagctgcagaagaac
caggcgacgaccgtggccaagatcgctcagtacaagaggaagctgatggatctctcccac
agagtgctgcaggtactgatcaaacaggagattcagagaaaaagcggttatgctatccag
gtggatgaggagcatctcagggtgcagctggacaccattcagtcagaactcaatgccccc
acacagttcaagggccggttgaatgaattaatgtcccaaattcgaatgcaaaaccacttt
ggagcggtgaggtcagaggagcgctacaatgttgatgcagaccttctcagagaaattaaa
caacatttgaagcagcagcaggatggcttgagtcacttgatcagcgtcatcaaagaagac
ttggaggacatcaaactcatcgagcacggcctgagcgacagcggccacacgagaggaggc
atgctgagctga
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