Kryptolebias marmoratus (mangrove rivulus): 108231430
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Entry
108231430 CDS
T05608
Symbol
stau1
Name
(RefSeq) double-stranded RNA-binding protein Staufen homolog 1 isoform X1
KO
K17597
double-stranded RNA-binding protein Staufen
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
kmr01009
]
108231430 (stau1)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kmr03019
]
108231430 (stau1)
Protein phosphatases and associated proteins [BR:
kmr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108231430 (stau1)
Messenger RNA biogenesis [BR:
kmr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
108231430 (stau1)
mRNA cycle factors
Stress granule specific factors
108231430 (stau1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dsrm
Staufen_C
Dicer_dsRBD
Motif
Other DBs
NCBI-GeneID:
108231430
NCBI-ProteinID:
XP_017263988
LinkDB
All DBs
Position
LG4:complement(12009721..12016317)
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AA seq
695 aa
AA seq
DB search
MSQLQFQCPASPVPAASAPLQLGQPQPGYSIPCATGALPSESASQPVRTSALPAGSATPY
NTTTVSNMANPKEKTPMCLVNELARFNKIQPEYKLLSEQGPAHSKIFSVRLTLGDQHWEA
EGTSIKKAQHSAAASALAETTLPKPTVRTPRSTGRNPADGITHTMELNALCVKLGKKPNF
KPIDPYPGMRPPNFNYNVRAPGPYQRSMQQYYYPFPPVGPMIYHMELSIGGQQFIGKGRT
RQMAKHEAAAKALKVLQKEPMLQQCPVMNGEPEEENLNKSEISQVFEIALKRDLPVSFEV
LKEEGPPHMKSFVVRVAVGEFVGEGEGKSKKIAKKLAAAAVLSELKRLPHMPSAEKKLPR
IKKKTKSIIKLQTSPEYGQGMNPISRLAQIQQAKKEKEPEYAMVTERGLPRRREFVMQVT
VCGQSAEGMGPSKKVAKRNAAEKMLELLGYKVPQPQPPKPALKTDEKTPVKKPSDGRKVT
FFEPGSVEEVALGSKEDDFRLPYLSTQQLPAGILPMVPEVAQAVRACQGPQARDYSRAVP
NPGKATITAMIANELLYAGTSMTAETILKSKNIMSQLPHGPITRPSEQLGYLASVQNLQV
DYTDFPKNNKNEFVSLINCSSQPPLISHGIGKDVESCHDMAALNILKLLSELDLQANERT
GNGPTSGCGKQEMEGDLHLKQANSSTLAQTLDGKA
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagctccagttccaatgccccgccagtcccgtgcccgctgcctccgccccgttg
cagctggggcagccgcagcccggctacagcatcccctgtgcaacaggcgcccttccatca
gagagtgccagtcagcccgtcaggacctccgctctcccagcgggctctgccactccttat
aataccaccacagtatctaacatggcaaaccctaaagagaagacccccatgtgtttggtg
aatgagttagcccgttttaacaagatccaacccgagtacaagctgctttctgagcaagga
ccagctcactccaagattttctcagtcaggctcacgctgggagatcagcactgggaggca
gaggggaccagtatcaagaaagcccagcattccgccgccgcgtcggctcttgctgagacg
acgcttcccaagcccaccgtgaggacgccccgcagcacaggcaggaacccagcagatggc
attacacataccatggagctgaatgcactctgtgtgaagctcggcaaaaagcccaacttt
aaacctatcgacccgtacccggggatgagaccgccaaacttcaactacaacgtccgggct
cccgggccttaccagcgctctatgcaacagtactactatccatttcctccagtgggacca
atgatctaccacatggagctttccatcggaggccagcagttcattgggaaggggcgcaca
aggcagatggccaaacacgaagcggctgccaaggctttgaaagtgctgcagaaggaaccc
atgctgcagcagtgtccagtgatgaacggcgaacccgaggaggagaacttgaacaaatcg
gaaatcagccaagtatttgaaattgccctgaaacgggacttacctgtcagctttgaggtt
ttgaaagaagagggccctccacacatgaaaagttttgtagtgcgtgtcgcagttggggag
ttcgtgggagaaggcgaggggaaaagcaaaaagatcgccaagaagctggcggcagcggcg
gtcctgagcgagctgaagcggctgccccacatgccgagcgcggagaagaagctgccgcgc
atcaaaaagaaaaccaaatctatcatcaagctgcagaccagccccgagtacggccagggg
atgaatcccatcagccgcctggctcagatccagcaggccaagaaggagaaggagccagag
tacgccatggtcacagagcgaggcctgccacggcgccgggagttcgtcatgcaggtgact
gtgtgtggccagtctgcagagggaatgggaccgagtaagaaggtggccaagaggaacgca
gcagagaaaatgctggaactcttaggatataaagtgcctcagcctcagcctcccaaacca
gccctaaaaacagatgagaagaccccagtgaaaaaaccaagcgatgggcgcaaagtgacc
ttctttgaaccgggttctgtagaggaggtggcattgggttctaaagaggacgacttccgc
ctgccttacctcagcacccagcagctgcctgcgggtattctgcccatggtgcccgaggtg
gcccaggcagtcagagcctgccagggacctcaggccagggactacagccgggccgtgccc
aatccaggcaaggccaccatcactgccatgattgccaacgagctgctgtatgctgggacg
tccatgaccgctgagactatcctaaagagcaaaaatatcatgagccagctgccccacggc
cccatcaccaggccgtcggagcagctcggatacctcgcgtccgtgcagaacttgcaggtg
gattacacagactttcccaaaaacaataagaatgagtttgtgtcgctgatcaattgctcc
tcccagcctccgctcatcagtcacgggattggaaaagatgtagaatcgtgccacgatatg
gctgctctgaatatattaaagttactctctgaattggacctgcaggcgaacgagcggaca
ggaaacggaccaacctcgggatgcggcaagcaggagatggaaggcgacttgcacctcaaa
caggctaactcaagcacattggcacagacacttgacggcaaagcttag
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