Kryptolebias marmoratus (mangrove rivulus): 108231621
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Entry
108231621 CDS
T05608
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr04510
Focal adhesion
kmr04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108231621 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108231621 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
kmr00536
]
108231621 (col2a1b)
Glycosaminoglycan binding proteins [BR:
kmr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108231621 (col2a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
108231621
NCBI-ProteinID:
XP_017264252
UniProt:
A0A3Q3AHT1
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All DBs
Position
LG4:complement(9336048..9380292)
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AA seq
1490 aa
AA seq
DB search
MFSLLDSRTVLLLAATQVCLLAVVRCQDYGQEDDFSCVQDGQQYGNQDIWKPEPCRICVC
DTGTILCDEIVCEELRDCPKPEIPFGECCPICAADPSTPSGVPGVKGQKGEPGDITDVVG
PRGPSGPTGPPGEQGPRGPRGEKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGG
SFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQGFQGSPGEAGEPGQSG
PMGPRGPPGPPGKSGDDGEPGKPGKGGERGPPGPQGARGFPGTPGLPGIKGHRGYSGLDG
AKGETGSVGSKGEAGAPGESGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLSGPAGPPG
PVGPAGAPGFPGSPGAKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGASGNPGTDGIPG
AKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTAGDLGIPGFKGEAGPKGEIGPLG
LQGAPGPQGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSG
ASGPKGATGDPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARG
QPGVMGFPGPKGATGEPGKSGEKGLAGAHGLRGLPGKDGETGAAGPPGPAGPAGERGEQG
QPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEGGPAGATGPRRERGFPGERGAAGPQGLQG
PRGLPGTPGTDGPKGAIGPAGTAGAQGPPGLQGMPGERGGAGIPGPKGDRGDIGEKGPEG
ASGKDGGRGLTGPIGPPGPSGPNGEKGESGPAGPSGPAGVRGAPGDRGETGPPGPAGFAG
SPGADGQPGIKGEQGESGQKGDAGAPGPQGPSGAPGPAGPTGVFGPKGARGAQGPPGATG
FPGAAGRVGPPGPNGNPGPSGPAGPPGKDGPKGVRGDSGPPGRQGDAGLRGPAGTPGEKG
DAGEDGPPGPPGPSGPQGLAGQRGIVGLPGQRGERGFSGLPGPSGEPGKQGATGGAGDRG
PPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGSAGIKGDRGNTGPAGAPGAPGAPGASG
PVGPTGKQGDRGEPGAQGPSGSPGPAGARGMPGPQGPRGDKGEAGESGERGQKGHRGFTG
LQGLPGPPGQSGDQGATGPAGPAGQRGPPGPIGPAGKDGSYGSPGPIGPPGPRGRTGETG
PAGPPGNTGPPGPPGPPGPGIDMSAFAVLGQTEKSPDPIRYMRADQAAGNLRQHDAEVDA
TLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTIDAIKVFCNM
ETGESCVHPKPAKIPRKHWWSNKSKDRKHIWFGETMNGGFHFGYGDDSLAPNTAAIQMTF
LRLLSTEASQNLTYHCKNSVAYMDASTGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMEDG
CTRHTGHWGKTVIEYRSQKTSRLPLVDIAPMDIGGADQEFGLDVGPVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgttcagcttgctggattcaaggactgtactgctacttgcagcaacccaagtttgtcta
ttagccgttgtgagatgtcaggattatggccaagaggatgattttagctgtgtacaagat
ggacagcaatatggcaaccaggacatatggaaaccagagccttgtcgcatctgtgtgtgt
gacactgggacaatcctgtgtgatgaaattgtctgcgaggagctaagagactgccccaaa
cctgaaatcccattcggagagtgttgccccatctgtgctgctgacccatctacaccttct
ggagtacctggagttaagggtcagaagggtgaaccgggagacattacagatgttgtagga
ccaagaggaccatctggcccaacgggcccaccaggagagcaaggaccccgcggaccgaga
ggagagaaaggagagaagggaagccctggtcctcgtggcagagatggtgaacctggcacc
cctggaaaccccggaccccctggacctcccggacctaacggaccccctggccttggtggg
agctttgctgctcagatggccggtggttttgacgagaaggctggcggcgctcagatgggt
gtgatgcaaggaccaatgggccccatgggacccagaggaccacctgggccctccggatca
cctggtccacaaggtttccaaggcagcccaggagaggctggagagcccggacaatctggc
cccatgggtccccgcggccccccaggacctcctggaaaatctggagatgatggcgagcct
ggcaaaccaggaaaaggaggtgagcgtggacctcctggacctcagggagctcgtggattc
ccaggaactcctgggctgcccggcatcaagggacacagaggttactcaggtcttgatggt
gcaaagggagagactggttctgttggttctaagggcgaggctggtgctcctggagagagc
ggcgcacctggacccatgggacctcgtggtttacctggtgagagaggacgtcctggaccc
tctggagctgctggagcccgtggaaatgacggcttgtctggtcctgctggtcctcctggt
cctgttggtccagctggagctccaggcttccctggctctcctggtgcaaagggagaagct
ggacctactggtgctcgtggaccagagggagctcagggaccccgtggagagtctggtacc
cctggatcacccggaccatctggcgcctctggtaaccctggtactgatggtatccctgga
gctaaagggtctgctggagctccaggtatcgccggtgctcctggcttccctggacctcgt
gggcctcctgggcctcaaggagccactggacctcttgggccaaaaggaacagctggagat
ctcggtattccagggtttaaaggagaggctgggcctaaaggagaaattggaccacttggt
cttcagggagctcctggcccacaaggagaagaaggcaagcgaggaccccggggtgagcct
ggtgctgctggaccgcttggacctcctggagagagaggagctcctggtaatcgtggtttc
cctggtcaagatggtctggctggccctaagggagcccccggtgagcgtggaccctctgga
gccagtggtcccaaaggggccacaggtgaccccggccgtcctggagagtctggtcttcct
ggagccaggggcctgactggtcgtcctggtgatgctggacctcagggcaaagttggaccc
tctggagctcctggtgaggatggccgtccaggacccccaggccctcagggagcccgtgga
cagcctggtgtcatgggatttcctggacccaaaggagcaactggggaacctggcaagtcg
ggtgagaaaggactggctggagctcatggtctaagaggtctgcctggcaaagatggagaa
accggcgccgctggaccccctggccctgctggccctgccggggagagaggagagcaaggg
cagcccggtccgtccggcttccagggtcttcctggacctcctggacctcctggagaggga
ggcaaacctggagaccagggtgttcctggagagggtgggcctgctggtgccactggaccc
agaagagagcgtggtttccctggagagagaggagctgctggccctcaaggtctgcaggga
ccccgaggcctgcctggaactcccggaaccgacggacccaaaggagccattggacctgct
ggtactgcaggagctcagggacccccgggcctgcagggaatgcccggagagagaggaggt
gctggcattcctggacccaaaggagacagaggcgacattggagagaaaggacctgaaggc
gcttcaggcaaagatggtggcagaggtctcactggtcccatcggtcctcctggaccttca
ggtccaaacggtgagaagggtgaatctgggcccgctggaccatctggacctgctggtgtt
cgcggtgctcctggtgacagaggagagactggacctcctggacctgctgggtttgctgga
tctcctggtgctgatggtcagcctggaatcaagggagagcagggagagtctggacagaag
ggagacgctggtgcccctggaccccaaggaccatctggtgcccctggacctgcaggtcct
acaggggtttttggacctaaaggtgctcgtggtgctcagggacctcctggtgccactggt
ttccctggagctgctggccgggttggacctcctggtcccaacggtaatcctggaccctct
ggtcctgccgggcctcctggtaaagatggacccaagggtgtgagaggagattctggacct
ccaggtagacagggtgatgctgggcttcgtggtcctgcaggaactccaggagagaaaggc
gacgctggagaggatggtcctcctggtccaccaggtccctcaggtcctcagggactggct
gggcagcgcggcattgttggtctgcctggacagcgcggtgaaagaggtttctctggtctg
cctgggccttctggtgagccaggaaagcagggagctactggtggtgctggagaccgtgga
ccccctggacctgttggacctcctggactcactggacctgcaggagaacccggcagagag
ggcaaccctggatctgacggacctcctggtagagatggttctgctggaatcaagggtgat
cgtggtaacactggacctgcaggtgctcctggtgctccaggtgctcctggtgcttcaggc
ccagtgggacccaccggcaaacagggcgacagaggagagcctggtgcacaaggaccttct
ggatctccaggacctgctggagccaggggaatgcctggaccccaaggaccccgtggtgac
aagggagaggctggagagtctggtgagagaggacagaagggacacagaggtttcactggt
ctgcagggtctccctggacccccaggccagtctggagaccagggtgctactggacctgct
ggacctgctggacaaagaggaccacctggacctattggccctgctggaaaggatggttct
tatggttcgccaggacccattggtcctccaggacctcgtggtcgcactggagaaactggc
cctgctggtcctcctggaaacactggaccccctggtccccctggtccccctggacctggt
attgacatgtctgcctttgctgttctgggtcaaaccgagaagtcgcccgatcctattagg
tacatgagggccgaccaggccgctggaaatctccgtcagcatgatgccgaggtcgacgcc
acgctcaaatctctcaacaaccagattgaaaacatccgcagcccggagggatccaaaaag
aatcctgctcgcacctgcagagatctgaagctctgccaccctgactggaagagcggtgag
tactggattgatcccaatcagggctgcaccatagatgcaatcaaggttttctgcaacatg
gagaccggtgagtcctgcgtccaccccaaacctgcaaagatccctcgcaagcactggtgg
tccaacaagagcaaagaccgcaaacacatctggtttggagagacaatgaatggaggattc
catttcggttatggtgacgacagcctggcgcccaatactgctgccattcagatgacgttc
ctgagacttctgtccaccgaggcgtctcaaaacctcacctaccactgtaagaacagcgtg
gcctacatggacgcctcaacgggcaacctgaagaaggccgtgctgctgcagggctctaat
gacgtggagatcagagccgagggcaacagccgcttcacctacagtgttatggaggatgga
tgcacgagacacacaggacactggggcaagacagtgatcgaatacaggtcgcagaagacc
tctcgcctgcccctcgtggacattgctcccatggatattggtggagcagaccaggagttc
ggactcgacgtcgggccagtctgcttcttgtaa
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integrated database retrieval system
