Kryptolebias marmoratus (mangrove rivulus): 108232048
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Entry
108232048 CDS
T05608
Symbol
slc6a1a
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 1a
KO
K05034
solute carrier family 6 (neurotransmitter transporter, GABA) member 1
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
108232048 (slc6a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
kmr02000
]
108232048 (slc6a1a)
Transporters [BR:
kmr02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
108232048 (slc6a1a)
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Gene cluster
GFIT
Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
108232048
NCBI-ProteinID:
XP_017265069
UniProt:
A0A3Q3B2G0
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Position
LG8:12376154..12384496
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AA seq
699 aa
AA seq
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MATNGTKTDGQVTELNEVVATNNDKPKTLDVKPEKTKKEVPARETWGGKFDFLLSCVGYA
IGLGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGVPLFLLECSLGQYTSIGGLGVWKLAPM
FKGVGLAAAVLSFWLNIYYIIIIAWAIYYLYNSFTTELPWSSCNNVWNTENCYTNYSIAD
TSNLTSAVQEFWKLNMHQMTDGLEKPGQIRVPLAITLAIAWVLVYFCIWKGVSWTGKVVY
FSATYPYFMLFILFIRGVTLPGAREGILFYITPDFEKLKESEVWLDAATQIFFSYGLGLG
SLIALGSYNTFNNNVYRDSVIVCCINSCTSMFAGFVIFSIVGFMAHVTKKDIADVAASGP
GLAFLAYPEAVTQLPVSPLWAILFFSMLLMLGIDSQFCTVEGFITALVDEFPRALRGRRE
IFIAVVCLVSYVIGLSNITQGGLYVFKLFDYYSASGMCLLFLVFFECISISWCYGVNKFY
DNIQEMIGYRPCIWWKLCWVVFTPLIVAGVFLFSAIQMVPLTMGDYVFPGWGQGVGWLMA
LSSMVLIPGYMVYMYLGLKGTYKERLRIMFQPPAVTRRCQENGPEQQVETNTANLSSPAN
PAPANPASPTNPAPANSTSPVTPANAAPPPANPASASSPVTSPAATITTTVTTASLANPP
TTTVSPTSPPPNPTSPTEPANPPNPTSPTSILTKGEANV
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgaacggcaccaaaacggacggacaagtcacagaactgaacgaggtggtggcc
actaacaatgacaaacccaaaacactggacgtgaagcccgaaaagacgaaaaaggaggtg
ccggccagagaaacgtggggggggaaatttgatttcctcctgtcttgcgtgggttatgca
attggactggggaacgtgtggagatttccctatctgtgtgggaaaaacggtggaggagcc
ttcttgattccttattttttgaccctgatatttgctggggtccccttgttcttgctggaa
tgctccctcggtcagtacacttcgatcggaggacttggtgtgtggaaactggctcctatg
tttaaaggcgtgggcctcgcagcggccgtcctctccttctggctcaacatctactacatt
ataatcattgcttgggccatttactacctgtacaactccttcaccactgagcttccctgg
agctcatgcaataatgtatggaacacagaaaactgttacacaaactactccatcgctgac
accagcaacctcaccagtgccgtgcaggagttctggaagctcaacatgcatcaaatgacc
gacggcttggaaaaaccaggccagattcgagtgccactggcaataacgctggccattgcc
tgggtcctcgtgtacttctgtatctggaaaggggttagctggacagggaaggtcgtttac
ttctcggccacgtacccgtacttcatgctgttcatcctcttcattcgcggggtgactcta
cctggagctagagaggggattttgttctatatcacccctgacttcgaaaagctgaaagaa
tcggaggtatggctggacgcagctacccagatctttttttcctacggactgggactgggg
tcacttatagctctgggcagctataatactttcaataacaacgtttacagagactccgtc
attgtgtgctgcatcaactcgtgtaccagcatgttcgctggctttgtcatcttttccatt
gttggcttcatggcgcatgtgacaaagaaagacattgcagacgtagcagcttcaggtcct
ggcttagctttccttgcgtacccggaggctgtaacccagttgcctgtctcacctctctgg
gccattctgttcttctccatgctgctcatgctggggatagacagccagttctgcaccgtt
gaaggcttcatcactgccctcgtggatgagttccccagggctctgcgaggcaggcgagag
atcttcatcgctgttgtctgtctggtgtcctatgtgatcggactctcaaacatcacacag
ggtggactctatgtgttcaaactgtttgactactactctgccagtgggatgtgtctgctg
ttcttggtcttctttgagtgcatctccatatcctggtgttacggtgtgaacaagttctac
gacaacatccaggagatgattggctacagaccctgtatatggtggaagctgtgctgggtc
gtgttcacccctctcatcgtggctggggtgttcttgttcagcgccatccaaatggttcct
ctcacgatgggagactacgtgttcccgggctggggtcagggagtaggttggctcatggcg
ctgtcctctatggttctcataccaggatacatggtctatatgtatcttggtctcaagggc
acttacaaggagcgacttcggataatgtttcagccccccgcggtgactaggcggtgtcag
gagaacggcccggagcaacaagtggaaaccaacaccgctaacctgtccagccccgccaac
ccggctcccgccaacccggccagccccaccaacccggctccggctaactccaccagcccg
gtgacgcccgccaacgcagcgccgccgccggccaacccggcctccgcttctagcccggtg
acgagccccgccgccaccatcaccaccacggtgaccacggccagcctggccaaccccccc
accacgactgtcagcccaaccagcccgcctcccaacccaaccagcccgacggagcccgcc
aatcccccgaacccaaccagcccgacttctatcctgaccaagggcgaggccaacgtgtag
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