Kryptolebias marmoratus (mangrove rivulus): 108232130
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Entry
108232130 CDS
T05608
Symbol
col9a3
Name
(RefSeq) collagen alpha-3(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr04510
Focal adhesion
kmr04512
ECM-receptor interaction
kmr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108232130 (col9a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108232130 (col9a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
108232130 (col9a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
kmr00535
]
108232130 (col9a3)
Proteoglycans [BR:
kmr00535
]
Extracellular matrix (ECM) proteoglycans
Others
108232130 (col9a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
108232130
NCBI-ProteinID:
XP_017265222
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Position
LG8:complement(11610204..11624592)
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AA seq
678 aa
AA seq
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MAAVSALWVLLLCQLLTSSSAQRPSPRGPPGPPGPPGQPGRDGIDGKPGPPGLPGKSGPK
GKAGIPGGAGKPGLPGLPGINGLTGPDGLAGKDGPPGEAGESGPPGPPGPPGRGRPGAPG
LPGTNGLPGGVGPQGPVGAEGLSGLPGPPGPDGPPGLPGTLHDLNGDLLCPAICPPGLPG
PPGMPGFKGHTGHKGDKGESGKDGEKGDPGPPGPAGAPGTVGLQGPRGLRGLQGSMGPVG
DRGLPGFRGKPGITGIIGKTGDVGERGPHGFKGPKGEIGKIGPKGTPGGPGPKGDPGMPG
RDGKDGTPGLDGEKGDPGHHGVVGEKGPNGLPGLPGKAGEKGSKGEVGDLGKPGEMGPSG
EPGIPGEIGVPGERGIAGPRGVAGGIGPAGNPGPLGVKGFQGVSGGLGDTGLPGPTGLRG
ELGDRGPVGASGAKGDMGVAGSDGLPGENGEPGPFGPVGQKGEPGKRGELGPKGVTGPQG
ELGPRGAPGKQGSMGFQGEQGLPGIAGKTGVPGKLTSEQHIRELCGSMIDDQMAQLAANL
RRPLAPGMVGNPGPAGPPGKPGGAGSIGHPGSRGPPGYRGLSGELGDPGPRGDVGEPGDK
GPIGKAIDGPSGDQGHQGLPGAAGIAKDGRDGSPGDPGEPGEPGRVGRTGHQGPPGICDT
SVCQGASVAGKSSNPKNF
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggtctctgctctttgggtgctcttgctgtgccagcttttgacatcctcctca
gctcagaggcccagccctagaggaccccccgggccaccgggacccccaggacaaccagga
cgggatgggattgacgggaaacctggacctcctggactgccgggcaaatctggtcccaaa
ggaaaagcaggaataccaggaggagcaggaaaaccgggcctgccaggacttccagggatc
aatggtttgaccggtcctgacggtcttgctggcaaagatggacccccaggggaggcaggt
gaatcagggcctcctggaccccctggacctcctggcagggggagaccaggagctccagga
ctacctggaaccaatggcttgccaggaggagttggaccccagggtcctgtgggcgctgaa
ggtctttcaggacttccaggacctcctggccctgatggaccccctgggcttcctgggact
cttcatgatcttaacggggaccttctgtgtcctgcaatctgcccccctggtctccccggt
ccccctgggatgccaggattcaagggacacactgggcacaaaggagacaagggggagtct
ggaaaagatggcgagaagggggaccctggtccaccgggaccagcaggtgctcctggcact
gtgggtctgcagggcccacgtggtctgagaggcttacaaggctcaatgggacctgtaggc
gacagaggtctgccaggcttcagaggcaagcccggcatcacgggcatcattggcaaaaca
ggcgatgttggtgaaagaggaccacatgggttcaaaggacctaaaggagaaattggtaaa
attggtcccaaaggaactcctgggggaccagggccaaaaggggatcctggtatgcctggc
agagatggcaaagatgggacaccagggttggacggtgagaagggtgatcctggacaccat
ggagtagtaggagagaaaggaccaaatggacttcctgggctaccaggaaaagctggtgaa
aaggggtccaaaggagaagttggtgatctggggaagcctggggagatggggccctctgga
gagccaggtattcctggtgagatcggcgtcccgggagagagggggatagcaggccccaga
ggagtggcgggaggtatcggaccggcgggcaatcctggcccgctgggagtgaaaggcttc
cagggagtcagtggaggtttgggcgatacaggacttccaggcccaacaggactccgtgga
gagttgggtgacagaggtccagttggagcttcaggagctaaaggagacatgggtgtggca
ggaagtgacggtttaccaggagagaacggcgagcctggtccttttgggccagttggacaa
aaaggagagccagggaagcgaggggaactggggccaaagggtgtgacaggtccacaaggc
gagctcgggccaagaggggctccagggaaacagggatcaatgggcttccaaggggaacag
ggtctgccaggaatcgcaggaaagacaggagtacctgggaaactgacaagcgaacagcac
atcagagagctgtgtggttcaatgatcgatgatcagatggcgcagctggccgctaacctt
cgaaggcctctggcacccggaatggtgggcaaccccggccccgcggggcctccaggaaag
ccaggaggcgcaggctctattgggcatcccggctctcgaggaccaccagggtacagaggc
ctatcaggagagctcggagatccaggtcccagaggtgacgttggtgagcctggtgataag
ggacccattggtaaagctattgatgggccgtctggagatcaaggacaccaaggtctgccg
ggagctgctggaattgccaaagatggtcgtgacgggtctccaggagacccaggtgagcct
ggagagccaggcagggtaggtaggactgggcaccagggtcctcctgggatctgtgacaca
tcggtctgccagggagcatcagtcgctggaaagtcctccaaccccaagaatttttaa
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