Kryptolebias marmoratus (mangrove rivulus): 108232178
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Entry
108232178 CDS
T05608
Symbol
cdkal1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase [EC:
2.8.4.5
]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
kmr03016
]
108232178 (cdkal1)
Enzymes [BR:
kmr01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
108232178 (cdkal1)
Transfer RNA biogenesis [BR:
kmr03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
108232178 (cdkal1)
Prokaryotic type
Methylthiotransferases
108232178 (cdkal1)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TraT
TRAM
Motif
Other DBs
NCBI-GeneID:
108232178
NCBI-ProteinID:
XP_017265283
UniProt:
A0A3Q3B9Y1
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Position
LG16:17318707..17529430
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AA seq
564 aa
AA seq
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MPSACDPLIEDIEDMVSSSDPTPHERQSARKSIIPRARKKKELLSNEELQTDSLIPGTQK
IWMKTWGCSHNNSDGEYMAGQLAASGYKMTDDPTEADVWLLNSCTVKNPAEDHFRNSIKK
AQEQQKKVVVAGCVPQAQPRMDYLKSLSIIGVQQIDRVVEVVDETVKGHSVRLLGQKKDG
GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVERARQS
FQEGVCEIWLTSEDTGAYGKDIGTDLPTLLWRLVEEIPEGAMLRLGMTNPPYILEHLEEM
AKILNHPRVFAFLHVPVQSASDSVLMDMKREYCVDDFKRVVDFLKERVPGVTIATDIICG
FPGETEDDFQETVKLVKHYQFPSLFINQFYPRPGTPAAKMEQVPAHVKKQRTKELSKVFH
SYNPYDHKVGERQHVLVTEESFDAQYYVAHNKFYEQVLVPKRLEFKGKMIEVDIYEAGKH
FMKGKPVEDSEPFTPSIAAPLQKGEVSGLMQEHVVNGVRGAASAPPDSALLIGCYSLDRD
ALKRLGIGLALAAAILAFIVEKLY
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgccgtccgcctgtgatcctctgatcgaagacattgaggacatggtgtcttctagtgac
cccactcctcatgaaagacagtccgctaggaagagcataataccacgggccaggaagaag
aaagagctcctgagcaacgaggagctccaaacggacagtttgattcctggtacccagaag
atctggatgaaaacctggggctgcagtcacaacaactcagatggagagtacatggccgga
cagctcgctgccagcggatacaagatgacagatgacccaacagaagcagacgtttggttg
ctcaacagctgcacagtgaaaaaccctgcagaggaccacttcagaaactcaatcaaaaaa
gcccaggagcagcagaagaaggtggttgtagcaggttgtgttcctcaagctcagccacgg
atggactacctcaaaagtctcagcattattggggtccagcagattgatcgagtggtggaa
gtagtggacgagactgttaaaggtcattcggttcgtcttttgggacagaagaaggatgga
ggcaaaagacttggaggggccagactggaccttccaaagatcagaaagaaccctcttatt
gaaatcatctccattaacactgggtgcctgaatgcctgtacctactgcaagactaaacat
gcccgaggagatctggccagctatcccatagaggagcttgtggagagagccagacagtct
ttccaggagggagtgtgtgagatctggttgaccagtgaggacacgggtgcttatggtaaa
gacatcgggacagacctgcctacgttactgtggaggttggtggaggagattcctgaagga
gccatgctgaggctggggatgaccaacccaccttacatcctggaacacctagaggagatg
gctaagattctgaatcatccacgagtctttgccttccttcacgttcctgtgcagtcggcc
tcagacagcgtactgatggacatgaagagagaatactgcgttgacgactttaagcgagtg
gtagacttcctcaaagagagagtacctggtgtaacaattgctacagatataatctgtggt
tttcccggtgaaactgaggacgatttccaagagacagtaaagctggtgaaacactatcaa
tttcccagtcttttcatcaaccagttctaccccagacccggtacccctgctgctaagatg
gagcaagtcccagcacatgtgaagaagcaaaggactaaagaactctcaaaggtcttccac
tcctacaacccttacgaccacaaggtgggcgagaggcaacacgtgctggtgacagaggag
tcattcgatgctcagtactatgtggctcacaacaagttctacgaacaggtgctggtacct
aagaggcttgagttcaaagggaagatgattgaggtggacatttacgaggcagggaaacac
tttatgaaagggaaaccagtggaagacagtgagccgttcactccctccatcgctgcgccg
cttcaaaaaggagaagtgtctggtttgatgcaggaacatgtggtgaacggagtcagagga
gctgcgtcggcaccgccggactcggccctcctgattggctgttacagtttagacagagac
gcgctgaagaggctggggataggactcgcactggcagcagccatcttggcctttattgtc
gagaagttgtactga
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