Kryptolebias marmoratus (mangrove rivulus): 108232483
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Entry
108232483 CDS
T05608
Symbol
sox1a
Name
(RefSeq) transcription factor Sox-1a
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
kmr03000
]
108232483 (sox1a)
Transcription factors [BR:
kmr03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
108232483 (sox1a)
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Ortholog
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GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
108232483
NCBI-ProteinID:
XP_017265802
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Position
LG6:15871096..15887586
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AA seq
297 aa
AA seq
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MYSMMMETDLHSPGPQTNTSTGPNSGSNKANQERVKRPMNAFMVWSRGQRRKMAQENPKM
HNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDKYS
LAGGLLSGPSAGGGVGLSVGMSSSGVGQRLESPGGHGGSAGSGYAHMNGWANGAYSGQVA
AAAAAAAMMQEAQLAYSQHPGSGAHHHHHSHHHHSHNPQPMHRYDMTALQYSPISNSQSY
MNASPSSYGGITYTQHQGSGVSSSAAMGTLGSLVKSEPSQSDHHSYHQWMWITEEGL
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggaaactgacctccattcccccggcccccaaacgaacacgagc
acggggccgaacagcgggtccaataaagcgaaccaggagcgcgtaaagagaccaatgaac
gcgtttatggtgtggtcccgcgggcagcgcaggaagatggcgcaggagaatcccaagatg
cacaactcagagatcagcaagcggctgggcgccgagtggaaggtgatgtccgaggcggag
aagcgccccttcatcgacgaggcgaaaaggttgcgagccatgcacatgaaggagcatccg
gattacaagtaccggcccaggcggaagaccaagacgctgctgaagaaggacaaatactcc
ctggctggtggactgctgtctggacccagcgccggcggtggagttggtttgagcgtcggc
atgagctcatccggggtcggacagaggttagagagccccgggggtcacggaggctccgcc
ggctccggctacgcgcacatgaacggctgggcgaacggcgcgtactcggggcaggtggct
gcagccgctgcggccgcagcgatgatgcaggaggctcagctcgcctacagccagcacccc
ggcagcggagcgcaccaccaccaccactcgcaccaccaccactcgcacaacccgcagccc
atgcaccgctacgacatgacggccctgcagtacagccccatctcgaactctcagagctac
atgaacgcctcaccgtccagctacggcgggatcacctacacgcagcaccagggctccggc
gtctcctcctcggccgccatggggacgttagggtcgctggtgaagtcggagccgagccaa
agtgaccatcacagctatcaccagtggatgtggatcactgaggagggactgtga
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