Kryptolebias marmoratus (mangrove rivulus): 108232515
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Entry
108232515 CDS
T05608
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03013
Nucleocytoplasmic transport
kmr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108232515 (upf3a)
03015 mRNA surveillance pathway
108232515 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kmr03019
]
108232515 (upf3a)
Messenger RNA biogenesis [BR:
kmr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108232515 (upf3a)
mRNA cycle factors
P-body specific factors
108232515 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
108232515
NCBI-ProteinID:
XP_017265865
LinkDB
All DBs
Position
LG6:17854580..17860159
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AA seq
468 aa
AA seq
DB search
MRSEKDQMTAGKEKCLVEIQFRDIPREQENLPGNTKQKEEKKEIFTKVVIRRLPPNLSKD
QLEEQLSPLPSYDYFEFFPADPSLYPHLFSRAYINFKNTDDILLFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKISKKKLKKKDAKAGSIEEDPEYKRFLENYSCDEEKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKIEKQRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEAEKQKKLSDKDIQIKLLKKSDKDDDVDSDRMKDKSDSGEPDRGKWEKAGGQIKSK
EPKEKGQPESDKEQREQQHGRRQRDKDHRGKDEERKRQRHHYEFDKFMRRKDETKWGKGY
CQDRAKKEGHHHGYSYCPDSGDKMGKEDREELSNRKERLRNKVSEKDRPAMQLYQPGARN
RKRMSSASKGYDCIPVGHSPDCRTEHCYEVVSMTTGLERGFEKSKDEQ
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaaaggaccagatgaccgcggggaaggagaaatgtctcgtcgagatacaa
ttcagggacatcccaagagagcaggaaaaccttcctggcaacaccaagcagaaagaagag
aagaaagaaatatttacgaaggtggtgattcggaggctcccacctaacctgtcgaaggac
cagctagaagaacaactgagtccacttccctcttatgattactttgagttctttccagca
gatccaagtctctatccccacctgttctctagagcttatatcaatttcaaaaacacagat
gatatcctgctgttcagggaccgatttgatggctatgtgttcattgacaacaagggccaa
gaatatcctgctgtggtagagtttgccccctttcagaagatttcaaagaagaagctgaag
aagaaagatgccaaagctggaagcattgaagaagacccagaatataagcgattcttggag
aactactcctgtgatgaggaaaagtctatggccaaccccgaaacgttgctgggcgagatc
gaggccaagaccagagagctcatagccaaacggacaacacctttgctggaatacatcaaa
aataagaaaattgaaaaacagaggataagagaggagaagagagaggagaggcgaagaaga
gagcttgaaaagaaaaggcagcgggaggaggagaaacgaaagcgcagagaggaagagaga
cgcaagcgaaaagaagccgaaaagcagaagaaactgtcagataaagacattcaaattaag
cttctgaagaagagtgacaaagatgatgatgttgattcggaccgaatgaaggacaaaagt
gattcaggagaaccagacaggggcaaatgggagaaagctggaggacaaataaagtcaaaa
gaacccaaggagaaaggccagcctgagagcgacaaggagcagcgagagcagcagcatggg
cgcagacagagagacaaagaccaccgtggaaaagatgaagagaggaaacgacaacgacac
cactacgagttcgacaagttcatgcggcggaaagacgagaccaaatgggggaaaggctac
tgccaggaccgagccaagaaagaggggcatcatcacggctactcgtactgtcctgacagt
ggagacaaaatgggaaaggaggacagggaagagctgagtaacaggaaggaacgcctccga
aacaaggtgagcgagaaggaccgtccagccatgcagctctatcagccaggagcacgcaac
aggaaacgcatgagttcagcaagcaaaggctatgactgcatccccgtgggccactctcct
gactgcaggacggagcactgttatgaggttgtctccatgacaacaggactggagaggggg
tttgagaaaagcaaagatgaacagtga
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