Kryptolebias marmoratus (mangrove rivulus): 108232526
Help
Entry
108232526 CDS
T05608
Symbol
rc3h2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
kmr03000
]
108232526 (rc3h2)
04121 Ubiquitin system [BR:
kmr04121
]
108232526 (rc3h2)
Transcription factors [BR:
kmr03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
108232526 (rc3h2)
Ubiquitin system [BR:
kmr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108232526 (rc3h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_2
zf-RING_UBOX
zf-CCCH_4
zf-CCCH_UNK
zf_CCCH_4
Prok-RING_4
zf-C3HC4
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
108232526
NCBI-ProteinID:
XP_017265885
LinkDB
All DBs
Position
LG14:18637755..18666308
Genome browser
AA seq
1130 aa
AA seq
DB search
MPVQAAQWTDFLSCPICYNEFDSGGHQPISLGCSHTVCKTCLHKLHRKACPFDQTPISTD
IDLLPVNCALLQLVGAQVPDVQPVSLDSSADVEHYEVCRLCVEELALYLKPISSTKGVVN
LSPSVLSRPMQRKLVTLVNCQLVEEEGRVRAVRAARSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEDALKLVLLALEDGSALSRKVLVLFVVQKLEARFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLVHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLTSLRPHLELLANI
DHNPDAPAPSWAELEDVMLAVKLVVHGLVEFIQNFSKKSHDAPQPQANSKYKTSMCRDLR
QQGGCPRGTNCTFAHTQDELENPLNFPAVPSTPHRFRLKNKKSSSVVRPFPPASKGLKDP
AETPTSVTEGVSCPTHPQLISRGPGAMEEVKRAVANGTIGANGSNGLSGTSRITPGSTEQ
KPISPARTPVSHSSAPSALNTAGGADGASLPRHGQFILSTPHPSQELYYQDPHPAYDTAH
YQPTSGSYYPSALHPHHKPCMARFPRSANIPESSLPPSSYPNDPQTPHPPSSSSSSGYPP
HPHRDRMGPPAFHPHPGQPPYGPLAPAHGVYAPLYDSRRVWRPQLYHREDARSNSLPPEV
LHSSVYQPPLRERFNSLDNYCSGAEHRAGLHRDYGRVPLGYEDLYRRKQDQWTPIHHHHN
PSRPSQSSPIFTDFGAEHMESSGGQCAGCRFRDEESLAHYSPWSCGTAGSCLSPFEPEAL
AHTAAHSCSEHPELDSSEGEAGSRKQWLHTLDHYRRLKDEDPIIPFSEAPIISKWGAISR
VSRTGYHTTEPIQATACQGGASTTPINFKDYNHHLDHSDYRWSSRGSDSSSHSSFLESEH
LCASELEGCRASISSGEKVGSDLQNRQSAFSQDQNQAERELDTDRDIELDLRVLDIEDSD
NQEIKSQESLDLPSPPSQDASHLLPPPCSSPLRSSPVEEPPQTEGLITEKMDAHLLKKMA
FRKSLSPGGLTSGGLGIGKLVLRTGPTQLGDASTRACPESPGTEMLLNGS
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaggcggcccagtggacggacttcctgtcctgtcccatctgctacaacgag
ttcgacagtggcggccaccagcccatcagcctgggctgctcccacaccgtgtgcaagacg
tgtctccacaagctgcaccgcaaggcctgccccttcgatcagacgcccatcagcaccgac
atcgacctgctgccggtcaactgcgccctgctgcagctggtcggagcgcaggtcccagat
gttcagcctgtgagtctggacagctcagcagatgttgagcactacgaggtctgcaggctg
tgcgtggaagagctggctctctacctgaagcctatcagcagcacgaaaggtgtggtgaac
ctgagtccgagcgtgctcagccggcccatgcagaggaagctggtgaccctggtgaactgc
cagctggtggaggaggagggccgagtgcgggcggtccgcgcagcccgctcgctgggggaa
cggacggtgactgagctcatcctgcagcaccagaacccccagcagctctctgccaacctc
tgggcagcagtgagggcacgtggctgccagtttctggggcctgctatgcaagaagacgcg
ctgaagctggtcctgctggctctggaggacggctcggctctgtccaggaaggtcctggtt
ttgtttgtcgtccagaagctcgaagctcggttccctcaggcgtctaaaaccagcatcggc
cacgtggtgcagctgctctacagggcgtcctgcttcaaggtgacgaagcgcgacgaggac
tcctcgctgatgcagctgaaggaggagtttcgtacgtacgaggcgctgaggagggaacac
gacgcacagatcgtccacatcgccatggaggcgggccttcgaatctcacctgagcagtgg
tcctccctgctgtatggagacctggtccacaagtcacatatgcagtccatcattgacaag
ttgcagtctccagaatcgtttgcaaaaagcgtccaggagctgacaattgtcctgcagagg
acaggagaccccgcaaacctcacaagccttagacctcacttagagctactggccaacata
gaccacaaccctgacgctcccgctccatcgtgggcagagctggaggatgtgatgctggcc
gtgaagctggtggtccacggactggttgaattcatacagaacttcagcaagaagagtcac
gacgctccacagccccaggccaacagcaagtataagaccagcatgtgcagagatctccgt
cagcagggaggctgcccgcgaggaaccaactgtacgtttgcgcacacgcaggacgagctg
gagaaccctctgaattttcccgctgtcccctccactccccacagatttcgactgaagaac
aaaaagagcagcagtgtggtccgtccgttccctccggccagtaaaggcctcaaagacccc
gcggagacccccacctccgtgacggagggggtttcctgcccaactcacccgcagctgatc
tccagagggccgggcgccatggaggaagtcaagagagccgtggctaatggaaccatcggg
gcgaacgggtccaacgggctctccggtaccagcagaatcacgccagggtcaacagagcag
aagcccatctctcctgccaggactcccgtgagccactcctctgcaccgtctgccttgaat
acagctggtggtgctgacggtgcttctctacccagacatggtcagttcatcctgtccaca
cctcatccctctcaggagctgtactaccaggacccccaccctgcctacgacacggcccac
tatcagccaacctcaggttcctactacccatccgctcttcatcctcatcacaaaccttgt
atggctcgtttcccccgatcggccaacatcccagaatcctctcttccgccatcttcctac
ccgaacgacccccagacgccacaccctccgtcttcttcgtcttcctcggggtatccgccg
cacccgcacagagaccggatgggccctcccgccttccacccccacccggggcagcctccg
tacggccccttggcgccggctcacggtgtttacgctcctctctacgacagcaggagagtc
tggaggcctcagctgtaccacagagaggacgccaggagtaactcgctgcctccggaggtg
ctgcattcctccgtctaccagcctccactcagggagagattcaactccctggacaactac
tgttctggagccgagcaccgagccgggctgcacagggactacggacgcgttcccctcggc
tacgaggatctgtacagacggaagcaggaccagtggactcctattcaccaccatcacaat
cccagcaggccctcccagtcttcgcccatcttcaccgattttggagcggagcatatggaa
agcagtggaggtcagtgcgccggatgccggttcagagatgaggaaagtctggcgcactac
tctccgtggtcctgcggcactgccgggtcctgcctcagcccctttgaacctgaagctctc
gcgcacacagcggctcactcctgctcggagcatccggagttggacagtagcgaaggagaa
gcaggtagcaggaagcagtggctgcatacgttggatcactacagacgtttgaaagacgag
gatcccatcattcccttcagcgaggcgcccattatctcaaagtggggcgccatttccagg
gtgtcccgcaccggttaccacaccaccgagcccatccaagctaccgcctgccagggcggc
gccagcaccacacccatcaacttcaaagattacaaccatcatttggatcacagtgactac
aggtggagctccagagggtctgactcctccagccactccagtttccttgagagtgagcat
ctttgtgcgtcagagctggaaggctgtcgggcttccataagcagcggagaaaaagttggg
tctgacctgcaaaaccgtcagagcgccttcagccaggatcagaaccaagctgagcgcgaa
ctggacacggatcgagacattgagcttgacctgcgtgttctagacatcgaggattcagac
aaccaggagatcaaatcgcaggagtccttagatctgcccagcccaccgtctcaggatgcc
tcccacctcctcccacctccctgctcgtctcccctccgctcctcccctgtagaggagccc
ccccagaccgaaggtcttataacagaaaagatggatgcccacctgctgaaaaagatggcc
tttaggaagtctctgtctccaggagggctgacctcgggaggactgggcatcgggaagctg
gtgctgcgaactggacctactcagctgggtgacgcttcaaccagagcttgtcctgaatct
ccagggacggagatgttgctcaacggaagctga
DBGET
integrated database retrieval system
