Kryptolebias marmoratus (mangrove rivulus): 108232762
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Entry
108232762 CDS
T05608
Symbol
ndc1
Name
(RefSeq) nucleoporin NDC1 isoform X1
KO
K14315
nucleoporin NDC1
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108232762 (ndc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kmr03019
]
108232762 (ndc1)
Messenger RNA biogenesis [BR:
kmr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108232762 (ndc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
108232762
NCBI-ProteinID:
XP_017266264
UniProt:
A0A3Q3BPX1
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All DBs
Position
LG20:complement(5711686..5720572)
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AA seq
669 aa
AA seq
DB search
MNIMFSTETSCWFIRKVICWRATASIAWSVLLLPPTTAVFVVLSRFSLFHPFQTISECLS
LLMSASSIFSFILLGGVIIMAGFLTLEYYTVIPTIACSKIALLGQLLHPRQFINSLAHCL
MGIIVGWCCAVTIGYRYEMLGYPCQNSDGYPQMCVNEYHLIVLLAGAFVGFSHSLLGVIH
NINYVSFQTVQQYKYFRFKGSLPLVVTCSATQAFYSVRNYIVVYFFLGYIPRTWICKTLT
LHVDSSIHPLDSIAGLLDLSLLFHLWISATFLLFMWYITLLLFRIFVTEAYSFPVQPSFT
EDSHQCLPKVLTDKHPMILKFLALQDLALLSQHSPSRRSEVFSLSQPGGHPHNWNAISKE
CLGLLADLTHRLVAYHETVATNGRAKSLSNGSERKTSSETSSAEDLMSPRPAFLMKTPVS
VFTRSVGGSSQSPLTVPFTPDLDSPFASPALRRLTAPVEQGSPWHGTVQSPHIMRRAPKL
WSTSTDSQFNGSPLPSPASVPSPKQEATKPSFLSQFLQNRKEQVKSFLAKRVLIVYLFNK
LPEASSQALFADSQAHIWALEGLSYLVQASFTEDHFGVVQTTLPSILSSMLLLQEAVDRH
FKLPHASSKPVRSTGSIGDSAYKTLRFALRATLKTAIYRITTTFGDHLNAVEMSAEHRKR
LQQFLENKE
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgaacatcatgttttctacagagacaagttgctggttcatccgcaaggtaatttgctgg
agagctacagctagcatcgcctggtctgtcctcctactgccacccaccactgcagttttt
gtggtactcagcaggttcagtctctttcatccattccagacaatatcagaatgtttatct
ctgctgatgagtgccagttcaattttctccttcatactgcttggtggagtgatcatcatg
gctggtttcctgaccttggagtattacacagtcatcccaactattgcctgttcaaaaatc
gcactgttgggtcagctgctccaccctcgccagtttatcaactccctcgctcactgcctc
atgggtataattgtaggctggtgttgtgccgtcaccataggttacagatatgagatgctt
ggctacccatgccaaaatagcgatggttatcctcagatgtgtgtgaatgagtatcatctc
atcgttttgctggcgggagcgtttgttggattctctcacagtctgctgggagtgatccac
aacataaattacgtctcctttcaaactgttcagcaatacaaatactttcgcttcaaagga
tccctgccattggtggtgacgtgcagcgccactcaagcattttattctgtcaggaactac
attgttgtgtatttctttttaggatacattccaagaacatggatctgtaaaacactgact
ctacatgtagacagctccatccaccctcttgacagcattgctggactgctggacctttct
ctactcttccacctctggatcagtgccaccttcctcctcttcatgtggtacatcacactg
ctgctctttaggatctttgtcacggaggcatacagttttcctgtacagccgtcttttacg
gaagattcccaccagtgtcttcccaaagttcttactgacaagcacccaatgatcttaaag
tttctagctctgcaggacttggctctgttgtctcagcactctccttcacgacgcagtgaa
gtcttcagcctcagccagccaggcgggcatcctcataattggaacgccataagtaaagag
tgtctgggtcttctggctgatctgactcacagacttgtagcctatcatgaaaccgtagca
accaatggcagggccaagtcactgtcgaacgggagtgaaaggaaaacctcatctgagaca
tcaagtgcagaagacttgatgagtccaaggcctgctttcctaatgaaaactccagtgtca
gtcttcacccgctccgtcggaggaagctctcagagccctctgacagtaccgttcactccc
gacctggacagcccgtttgcttcccccgccctgcgacgtctcaccgctccagtggagcaa
ggctcgccatggcacgggacggtgcagagcccacatatcatgagaagagcaccgaaactc
tggtccacctccacagattctcagttcaacggcagcccgctgccttccccggcctctgtt
cccagtcccaagcaggaagccaccaaaccaagttttctgtctcagtttctccagaacaga
aaagaacaggttaaaagtttcttggcaaagcgagtgctgatagtgtatttgtttaacaag
cttccagaagcctccagtcaggctctgtttgccgacagtcaggctcacatctgggcgttg
gaagggctgtcttatcttgttcaagcctccttcacagaagaccattttggggtggttcaa
acaacattacccagcattcttagctccatgctgcttttacaagaggctgtggaccgacac
ttcaagctgcctcatgcttccagtaagcccgtcaggtcgaccggcagcattggagactcc
gcctacaagacgctgcgctttgctctccgggccacgctcaagacggccatttacaggata
acgaccacctttggagatcacttaaatgctgttgagatgtctgcggagcaccggaaaaga
ctgcagcagtttttggagaacaaggaataa
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